Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3612 |
Symbol | tpiA |
ID | 5106159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3985322 |
End bp | 3986077 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640504867 |
Product | triosephosphate isomerase |
Protein accession | YP_001189092 |
Protein GI | 146308627 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0149] Triosephosphate isomerase |
TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCGCC CCTTGGTCGC CGGTAACTGG AAAATGCACG GTACCCGCGC CAGCGTCGCA GAGCTGATCG AAGGGTTGCG TCGGCAGGAG TTGCCTGTCG AGGTGGATGT CGCGGTGTTT CCCTCCAGTC TGCATGTCAC GCAGGTCGTT GAAGGCCTGG CAGGCAAGGC AGTGAAAGTT GGGGCGCAAG ATTGCGCAGC GCAGGTGGAG CAGGGCGCCT TGACCGGTGA GCTGGCAGTG AGTCAGTTGG TCGATGGCGG TTGCGAACTG GTGCTGGTCG GCCACTCCGA GCGTCGCCTG ATTCTGGGTG AAAGTGACGA GGTGGTCGTT AGCAAGTTCG CGGCGGTGCA GAAGGCGGGG CTGACCCCTG TGCTCTGCGT CGGTGAGACC CGTGAGCAGC GTGAGGCGAA TGCGACGCTG GGTGTGGTGG GTGGTCAGTT GGCGGCGGTG ATAGATGCTC TTGGCGTCCA GGCCCTGAAC AACGCCGTTG TCGCTTATGA GCCTGTCTGG GCCATTGGCA CCGGGTTGAC CGCTACGCCC GAGCAAGCTC AGGAAGTTCA TGCGGCTATC CGCGCGCAGG TCGCGCAGCT GGATGCGCAG GTGGCCAGTG AGCTGAGAAT TCTTTATGGC GGCAGTGTAA AGGCCGCCAG TGCAGCCGAG TTGTTCGGCA TGCAGGATAT CGATGGGGGG CTTGTAGGTG GCGCCTCTCT GAATGCGGAT GAATTCGGTG CGATCTGTCG CGCTGCAGGA AACTGA
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Protein sequence | MRRPLVAGNW KMHGTRASVA ELIEGLRRQE LPVEVDVAVF PSSLHVTQVV EGLAGKAVKV GAQDCAAQVE QGALTGELAV SQLVDGGCEL VLVGHSERRL ILGESDEVVV SKFAAVQKAG LTPVLCVGET REQREANATL GVVGGQLAAV IDALGVQALN NAVVAYEPVW AIGTGLTATP EQAQEVHAAI RAQVAQLDAQ VASELRILYG GSVKAASAAE LFGMQDIDGG LVGGASLNAD EFGAICRAAG N
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