Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2179 |
Symbol | |
ID | 5109519 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2404436 |
End bp | 2405824 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640503423 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001187671 |
Protein GI | 146307206 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.159854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.0708517 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCCT TTGCCCCCGC CCTCCTGACC CTGGCGCTGT CGGCCTGCGC CGTCGGCCCG GACTATCGAG CGCCCGTGAC CGAGCCTGCG CGCATTGCCG CGCTGGAGGC GGCCGATTAC GACCGCAGCC GTTTCGAAGC CGCCTGGTGG CAGCAGTTCG ACGATCCGAC GCTGAACCAG CTGGTGCAGC GTTCGCTGCA GGACAACCGC GAGCTGCGCG TGGCCTTCAA CCGCCTGCGT GCCGCCCGGG CGATCCGCGA TGACGTGGCC AACGACCGCC TGCCCACCGT CACCAGCCGC GCCAGCGGTG AGTTCGGCAA GGCGCAGCAG CCACCGGTCA GCGAGGAGCG CATCCGTCAG GAGCGCTACG ACCTGGGCCT GGACATGGCC TGGGAGCTGG ACCTGTTCGG CCGCATCCAG CGCCAGCTGG AAGCCAGCGA GGCGCGCATC GAAGTGGCCG AGGCCGACTA CTACCAGTTG CAGGTCAGCC TGATCGCCGA GCTGGTCGAT GCCTACGGCA CCCTGCGTGG CGCACAGCTG CGCGAAAGCA TTGCCCGCGA GAACCTGAAG AACCAGCAGG ACTCGCGTGG CATCACCGAA CAGCTGCGCG ACGCCGGCGT CGGCAACGAA CTGGACGTGC TGCGCGCCGA TGCCCGCCTG GCCGCCACCG AAGCCAGCCT GCCGCAACTG CAGGCGCAGC AGGTGCGCGC GCAGAACCGC ATCGCCACCC TGCTCGGCCA GCGCCCGGAA CAGCTGCAGA TCGACCTGTC GCCCAAACCC CTGCCGGTGA TCGCCAAGGC CTTGCCCATC GGCAACCCGA GCGAACTGCT GCGCCGTCGC CCGGATATCC AGGCGGCCGA GCGGCAACTG GCGGCGGCCA CGGCCGAGGT CGGCGTGGCG ACGGCGGATC TGTTTCCGCG GGTCAGCCTC TCCGGCTTTC TCGGCTTTAC CGCCGGGCGC GGTTCGCAGC TGGGTTCGTC AGCAGCCCGC GCCTGGGGCG TAGCGCCGAG CATCAGCTGG GCGGCCTTCG ACCTGGGCAG CGTACGAGCA CGCCTGCGCG GCGCCGAAGC CGAGGCCGAT GGCGCGCTGT CGCAGTACGA ACAGCAGGTG CTGCTGGCGC TGGAAGAATC GGAAAACGCC TTCAGCGACT ACGCCAAACG CCAGCAGCGC CTGGTTTCCC TGGTGCGCCA GGCCGAAGCC AGCCGCGCGG CTGCCGACCA GGCGGCGATC CGTTATCGCG AAGGCACGGT GGACTTCCTC GTTCTGCTGG ACGCCGAGCG CGAGCGCCTG GCCGCCGAAG ACGCCCAGGC CGCGGCCGAA GTCGAGCTGT ACAGCGGCAT CGTCGCGATC TACAAGGCGC TCGGCGGCGG CTGGCAGCCA CAGGCCTGA
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Protein sequence | MKAFAPALLT LALSACAVGP DYRAPVTEPA RIAALEAADY DRSRFEAAWW QQFDDPTLNQ LVQRSLQDNR ELRVAFNRLR AARAIRDDVA NDRLPTVTSR ASGEFGKAQQ PPVSEERIRQ ERYDLGLDMA WELDLFGRIQ RQLEASEARI EVAEADYYQL QVSLIAELVD AYGTLRGAQL RESIARENLK NQQDSRGITE QLRDAGVGNE LDVLRADARL AATEASLPQL QAQQVRAQNR IATLLGQRPE QLQIDLSPKP LPVIAKALPI GNPSELLRRR PDIQAAERQL AAATAEVGVA TADLFPRVSL SGFLGFTAGR GSQLGSSAAR AWGVAPSISW AAFDLGSVRA RLRGAEAEAD GALSQYEQQV LLALEESENA FSDYAKRQQR LVSLVRQAEA SRAAADQAAI RYREGTVDFL VLLDAERERL AAEDAQAAAE VELYSGIVAI YKALGGGWQP QA
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