| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1085 |
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| Symbol | |
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| ID | 5108058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1221276 |
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| End bp | 1222703 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640502309 |
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| Product | GntR family transcriptional regulator |
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| Protein accession | YP_001186584 |
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| Protein GI | 146306119 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.350273 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCTGC ACCTGAGCAT CGACCCTGAC CAGCCCCTTG CCGCCCAGCT GTATCGCCAG
TTGCGCGAGG CCATTCTTGG CGGCCGCCTG CAGGCGGGAG AACGCCTGCC GCCGAGCCGC
TACCTGGCCG AGCGCCTGCA GGTGTCGCGC AAGACGGTCA GCGAGGCATA CGAGCAGCTG
CTTGCCGAGG GTTTCACCAG CACCCGGGTT GGCAGTGGCA CCTTCGTCAG CAGCCTGGCG
CAGACGGCCG CACCCACGCG CAGTGCCGCC ACCAGCCTGC TGCAACCCGC GGCGCGCTGG
CGGCGTCTGC CCGTGGCGCC GTTCGACAGC CCGGTGCAGG GCTGGCGCTA CAACTTCGCC
GGCGGCACGG TGAGCATGCG CCGCTTTCCC CTCGCTGCCT GGCGCACCAG CCTGCAGTAC
GCGCTGCGCC AGATGAGCCA GGGCAGCGGC TTCTATGCCG GCGTGCAGGG CCAGCCGGCG
CTGCGCCAGG CCATTGCCCG CTATCTGGCG CTCAACCGCG CGGTGCGCTG CGACTGGCAG
GATCTGCTGG TGACCCAGGG CGCGCAGCAG GGCCTCAGCC TGCTGTCTCA GGTGATGCTC
GAGCCCGGTG ATCGGGTGGC CATGGAGGAA CCCGGTTACA CCCCAGCGCG CAGCTGTTTC
CAGAGTGCCG GGGCCGAGGT GATCGGCGTG CCGGTGGATG ACGAGGGGCT GCGCGTGGAC
CTGCTGCCGG CGAACGTGCG CCTGGTCTAC GTCACGCCTT CGCATCAGTT TCCGCTGGGC
ATGCCGATGA GCCTGGCGCG GCGCCTGGCG TTGCTGGAGT GGGCGCGCGA GCACCGGGTG
CTGATCATCG AGGACGACTA CGACGGCGAG TTCCGCTTTC AGGGGCGGCC GCTGGAGGCG
CTGCAGAGCC TGGATCGTCA CGGCCTGGTG GCCTATCTGG GGACCTTCTC CAAGACCCTC
TATCCCCAGC AGCGGGTCGG CTATCTGCTG ATGCCGCCCG GGCTGCGCGA GGCGCTGGTG
CAGGCCAAGC TGCTTGGCGA CCGGCACGGC GACAGCCTGC AGCAATTGGC GCTGGCGCAT
TTCATGGAGC GCGGCGAGTT CGCCCGGCAT ACCCGACGCA TGCAGCGGTT GTATGCCGAG
CGCCGCGAGC ATCTGCTGCT GCGTCTGCAG GGCGATCTGG CGACCTGGCT GCAGCCCATA
GTGCCGATGG CCGGCATCCA CCTGGCGGCG CTGCTGCGCC CGGGTGTCGA CCCCGAGCGG
CTGGCGAGCG AGCTGCGCGG GCGCGGTATC GGCCTGGATT CGCTGGCCGC CTTCTATCAG
GGGCCGGCGC AGGCCGGTCT GCTGTTCGGT TTCGGCTGCA TCGAACTCGA CGACCTGCAG
GCCGGGCTGG ACGAGCTGCG TCTGGCGCTG CAGGCGGCCT GTCAGTAG
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| Protein sequence | MDLHLSIDPD QPLAAQLYRQ LREAILGGRL QAGERLPPSR YLAERLQVSR KTVSEAYEQL
LAEGFTSTRV GSGTFVSSLA QTAAPTRSAA TSLLQPAARW RRLPVAPFDS PVQGWRYNFA
GGTVSMRRFP LAAWRTSLQY ALRQMSQGSG FYAGVQGQPA LRQAIARYLA LNRAVRCDWQ
DLLVTQGAQQ GLSLLSQVML EPGDRVAMEE PGYTPARSCF QSAGAEVIGV PVDDEGLRVD
LLPANVRLVY VTPSHQFPLG MPMSLARRLA LLEWAREHRV LIIEDDYDGE FRFQGRPLEA
LQSLDRHGLV AYLGTFSKTL YPQQRVGYLL MPPGLREALV QAKLLGDRHG DSLQQLALAH
FMERGEFARH TRRMQRLYAE RREHLLLRLQ GDLATWLQPI VPMAGIHLAA LLRPGVDPER
LASELRGRGI GLDSLAAFYQ GPAQAGLLFG FGCIELDDLQ AGLDELRLAL QAACQ
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