Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0560 |
Symbol | |
ID | 5108184 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 606653 |
End bp | 608398 |
Gene Length | 1746 bp |
Protein Length | 581 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640501773 |
Product | potassium/proton antiporter |
Protein accession | YP_001186062 |
Protein GI | 146305597 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3263] NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.761529 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0000000416087 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | TTGGATGCCA GCGCCATCAA CAATCTGTTC TTGATCGGCG CCTTGCTGGT AGCAGCCAGC ATTCTGGTCA GCGCGTTCGG CACCCGCTTC GGCATCCCCA TCCTGGTGAT CTTCCTTGCG GTCGGCATGC TCGCCGGTAC CGACGGACCT GGCGGCATCG TCTTCAACAA CTACCCACTG GCCTATCTGG TCGGCAACCT GGCGTTGGCG GTGATCCTGC TCGACGGTGG CATGCGCACA CGGGTCTCCA GCTTCCGTGT GGCCCTGTGG CCTTCCTTGT CATTGGCGAC GGTCGGAGTG GTGATAACGG CGGGTTTGAC CGGTCTGGCC GCGGCCTGGC TATTCAACCT GACGCTGCTC GAGGGCCTGC TGATCGGCGC CATCGTCGGT TCCACCGATG CCGCGGCGGT GTTCTCCCTG CTGGGCGGGC GCGGTCTCAA CGAACGGGTC AGCTCCACAC TGGAAATCGA GTCCGGTAGC AACGACCCGA TGGCGGTGTT CCTCACCGTG ACCCTGATCG CCATGCTCGC CAGCGGCCAG ACCGGCTTCA GCTGGGACCT GCCGATCCAG CTGGTGCAGC AGTTCGGTCT CGGCGCTCTG CTCGGCCTGG GTGGCGGCTG GCTGCTGCTG AAACTGATCA ATCGCATGGA GCTGGCTACC GGCCTGTATC CGCTACTGGT GGTCAGCGGC GGCCTGATCA TCTTTGCCAT CACCACCGCC GTGGGTGGCA GCGGCATCCT CGCCATCTAC CTGTGCGGCC TGCTGCTGGG CAACCGACCG ATCCGTTCGC GCCACGGCAT TCTGCACATG CTCGACGGCC TCACCTGGCT GGCGCAGATC GGCATGTTCC TCGTCCTCGG CCTTCTGATC ACCCCGCACG AGCTGCTGCC GATCGCCCTG CCGGCACTGG CCCTGGCACT GTGGATGATC CTCTTCGCGC GACCGCTGTC GATCTTTCTC GGCCTGCTGC CATTTCGCGC CTTCCACGAC CGCGAGCGGA TCTTCATCGC CTGGGTCGGT CTGCGCGGCG CGGTGCCGAT CATCCTCGCG GTATTCCCGC TGATGGCCGG CCTGCCCAAT GCGCAGCTGT TCTTCAACGT CGCCTTCTTC ATCGTGATCG TCTCCCTGTT GCTGCAGGGC ACCAGCCTGC CGCTGGCGGC CAAGCTGATG CGCGTCACCG TACCGCCAGA GCCGGCCCCG GTGTCACGCG CCGGCCTTGA AGTGCACCCG ACCAGCCAGT GGGAGCTGTT CGTCTACCGC CTTGGCGCCG AGAAATGGTG CATCGGCGCC GCCCTGCGTG AGCTGAACAT GCCCGAGGGT ACGCGTATCG CCGCTCTGTT CCGCGGCCGC GAGCTGCTTC ACCCATCGGG CAGCACGCGC CTGGAGGCCG GGGATCTGCT CTGCGTGATC GGCCATGAGC ACGACCTGCC GGCGCTCGGC AAACTGTTCA GCCAGGCTCC CAAACGGGGC CAGGACCTGC GCTTCTTCGG CGACTTCGTA CTTGAAGGTG ACGCCGAACT GGCCGCCGTG GCCGCGCTCT ACGGCCTCAA GCTGGACGGT CTGGACGGCC ATCAGCCGCT GGGCCGTTTC ATCGCCCATG AAATCGGCGG CGAGCCGGTG GTCGGCGATC AGGTGGAGTG GCAGGGTCTG ACCTGGACGG TGGCCTCGAT GGAAGGGAAC AAGGTGCGCA AGGTCGGCGT CAGATTCCCC GAGGGCAGTC GTCCGGGCCC CGGGCTGTTC CTCTGA
|
Protein sequence | MDASAINNLF LIGALLVAAS ILVSAFGTRF GIPILVIFLA VGMLAGTDGP GGIVFNNYPL AYLVGNLALA VILLDGGMRT RVSSFRVALW PSLSLATVGV VITAGLTGLA AAWLFNLTLL EGLLIGAIVG STDAAAVFSL LGGRGLNERV SSTLEIESGS NDPMAVFLTV TLIAMLASGQ TGFSWDLPIQ LVQQFGLGAL LGLGGGWLLL KLINRMELAT GLYPLLVVSG GLIIFAITTA VGGSGILAIY LCGLLLGNRP IRSRHGILHM LDGLTWLAQI GMFLVLGLLI TPHELLPIAL PALALALWMI LFARPLSIFL GLLPFRAFHD RERIFIAWVG LRGAVPIILA VFPLMAGLPN AQLFFNVAFF IVIVSLLLQG TSLPLAAKLM RVTVPPEPAP VSRAGLEVHP TSQWELFVYR LGAEKWCIGA ALRELNMPEG TRIAALFRGR ELLHPSGSTR LEAGDLLCVI GHEHDLPALG KLFSQAPKRG QDLRFFGDFV LEGDAELAAV AALYGLKLDG LDGHQPLGRF IAHEIGGEPV VGDQVEWQGL TWTVASMEGN KVRKVGVRFP EGSRPGPGLF L
|
| |