Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plim_1377 |
Symbol | |
ID | 9138072 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Planctomyces limnophilus DSM 3776 |
Kingdom | Bacteria |
Replicon accession | NC_014148 |
Strand | + |
Start bp | 1752869 |
End bp | 1756549 |
Gene Length | 3681 bp |
Protein Length | 1226 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | |
Product | Exodeoxyribonuclease V |
Protein accession | YP_003629410 |
Protein GI | 296121632 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.246845 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAACTC CCCGCTACAC ACCTCAACAA ACGCGGGCCT TGACTGAGAA ATCGGTCTCG ATCGCTCTTT CGGCAGGTGC TGGTTGTGGC AAAACCTTTG TGCTGACGAG AAGATTTCTC GGGTATTTAA AGCCGGGGCC TGAGCAATAC CCGCTGACAT CGCTGGTGGC CATCACCTTT ACCGATAAAG CCGCTCGCGA GATGCGGGAT CGGGTACGGG CCACTTGTCT GCAGCGTGTG CGAGAATGTC CACCCGAAGA AGCTGACCAC TGGTTGAGTC TGCTGCGGGA TCTGGATCGA GCACGCATCA GTACGATCCA CTCCTTTTGC GGAAATATCC TGCGTTCGCA TGCGATCGCG AGTGGTCTCG ATCCCGAATT CACCACCCTC GAAGCGAGTG TGGCCGATTC GCTCCTGAGG CAATCGATTG AAGCCTCAGC CACGCGATTG CTGGTCAACG ATCAACCTGC ATTTCGGCTG CTGGCCGTCG ATTATGGTAT TGAGAAACTA CTCGAATCGT CAGGAATTCT CGTTCGACAA CGGCAACTGA TCTCTCTAGC AGACTTTGCC GAAATGACAG CCGAAGAGTT GGCAGGGATC TGGCATCGTT GGCTGAAAGA GACCGGCTGG CCAGCGTTTG TGCGGCAGAT CGAGCACCAG CGGACGTTTG TCAGGCTCAG TGAATTCATC TCTCGAACAT CAGCCAATTC TCCCAAGCTT GACGAGAAGC TGAAGATACT TCGACAGATC ATGGAGCAAT TGAAGAGTCA GCAAGACTCT CCAGAGCCGG GGCGTCTGGC AGAATTGTTT GCGGAGTTAT CGCTTCAGGC GCGAGTGGTG GGGGTGAAGC CTGATCATTG GGGATCTCCT GATGATCACG AACTGGCTAA GGAGTTGTTT ACGCAGGTTC GTGACGATTG CAAAAAGTTG ATTGAAACCA TTCAACTCGC TCAAACGGAG TTTGTCCCAT ACGCCGAGAA GAGCCTGGCA TGGCTCTCAG TCGCAGGTGA GTCAATCAGA GATTACGAAT TAATCAAGAA GTCGCGAGCA TGTGTTGACT TTGATGATCT GCTGGTTTTG AGCCGGGATT TGCTACGGAA CGATCTGACG GTGCGTCAGG CGTTGTCGCG CTCCATTCGT GTGCTGATGG TGGATGAATT TCAGGATACG GACCCCGTTC AGGCCGATCT GGTCGAGATG ATCTGCGGGA AGGAATTGAC GACAGGGAAG TTGTTCCTGG TGGGTGACCA GAAGCAAAGC ATCTATCGCT TTCGAGGTGC TGATCCTCTG GTGTTCAGAT CGTTAAAAAG CAAAATTCCA GCGGCTGGTC AACTCCCACT CACCATCAAC TTTCGCAGTC AGCCCCCGAT TCTGCACTTC GTAAACATTC TGTTTCGGCG GGTGATGGGA GCAGACTATG AGGCTTTGGA ACCCTCTTTC GCGGATGAGA AACCTGAACT TGAGCGGATT GAGTTTCTGT GGGCAACCAC GGATGTCGTT GAGAACAAGG CGGTTCAGGG AAGTATCCCG AGCACAGTTC CCCTGGCGCA AGGATTGGCC GATGAACAGG CCCGGGATGC TGCTGATGCG GAAAGTCAGG ATGTTGAAAA CATCGATGAT GATTCCCGCT CTGATTCCGG TGAGAAGCAG ACTGCTCCTT TTCTGAGACG GCGTGAAGCG GATTGGATTG CCCGTCGTAT TCTCGAGTTG CTGGCCGATC CAACACCGCG AATTCGGGAG AAAAGTGGCC CGTGGCGAAC CATCGTTCCT GGCGACATTA CGATTTTGTT CCGGGCGTTG ACGAACCTGG AGGTTTACGA ACAGGCGTTA GAAGCGGCGG GAATCGACTA TTATGTGGCG GGTGGCCGAG CGTTCTTTGC CCAGCAGGAA ATCTATGATC TGGCCCACTT GTGTCAGTTT CTGGATGACC CTGAGGATGG GTTCAGTCTC GTGGGCCTGT TACGCTCGCC ATTTTTCTGT TTCAGCGATC CACTGATTCA TCGACTGGCT TCACGTGCGG GTGGTATCAC CCAGTCGCTG TTTGCTGAAG CTTCGGTAGT CAGCGGTCTG TCGCCGGAAG AGACTGCACA GGTTCAGTTT GCAGCCCAGA CTCTCGGTTC ACTCGTGGAG CAGCGGGATC ACTGGCCATT GGCGAGAATC ATTCGCCGAG CCCTGGAATT GACGGGCTAT GAGGCCATTG TCTCTCAGGA GTTTCTCGGT TCGCGGAAAC TGGCGAATGT TCATAAAGCG ATTGAACTGG CCCGACAGTT TGACCTGGCG GGTGGTAGTC GTGCGGCGTT TGTGACTCAG CTGCGGGAAT CGATCGATCA GGAATCTCGC GAGGAGTTAG CCGCCACACA TCCCGAATCG AGCAGTGTGG TGCGTTTGAT GTCGATCCAC CAATCCAAGG GACTTGAGTT TCCAGTCGTC TTTGTGGCCG ATATGAATCG ACCGCGAAAG ACTGAATCGC TCCCACCGAC GCTTCATCCG CAGTTAGGGG CTTTGGTGAC ACCTTCGAAC CCCCTGGGTG AACGACAAAA ACATCCTGTG GGCCAATTCA TTGAGATCAT GGAAGAGGCT GCCAGCCTCG AAGAGTATCA GCGTCTGCTG TATGTCGCTG CCACACGAGC CCGGGATCTG TTGATCCTGT CTGCCGGGAT CAAAGGTTTT GATGAAGGAA AGTTTTCGCC GTGGATGCTG GTCTTGAAGC AAGTCTTTCA TCTCGAGACA GGTCTCTTGC GGAATGATCC CTGGTTTGCG AGCGGACATG AGGATGTGAA AACCCCGCAG GAGATTCCGC TCATTCGTAC TCATCATCAG CCACCGCAAT TCATCGACCA CAGAGTTCAG CGACAGGGTG TTCACAAGCT GTCATTTCCA CAGGTCTGGA ATGAACTAGA ACTGGCCGAA TCTTTGCCCT GGCCTCAACT CGTGGCGGAT GTTCAGCGGG GTGCGGAAGG TCGCAGGCGA TTGAGTGTTT CGCGACTGGA GGAGTTTCAG GAACAAAGTT CATCGAAATT GAAGAGTCTC GTTCCAGCAG GTGAATTGGA AGCACATTCG GCGAGTCTCA GTCGCAGCGA TGCGGAACTG TTGGGAGAAA TGATTCATGG CGTACTGGAG CGATTTGAAC CTCGCGCCGC AGAGGAGTCC GAAAAGGCTT TGCTCCATCG ACTGTGGCTG TGGTGCCAGA GACAGCCTGC ACCACCTGGA GGCCAGATTC TGGAGCAGGC ACAGCAATGG CTCAAGACGT TTGCATCGAC CGAGCTGATT GATGAACTGG CCATGGCCAG TGAACTGAAT CGAGAACTGG AGTTCAGTCT CGATTGGAAA ATGACTGGAG AAGAGCCGAA ACGAGAAACA GAGATCTATG GTCTGATCGA TGTCCTGATG AAGGATTCTC AGGATGATTG GATCATTCTC GATTACAAGA CGAGTCGCCT TGCGGCTGGA GTAACTGATG AACTGCTGCT CCAGCCGTAT CGATTGCAAT TGGGAACATA TGCCCTCGCC GTGCAGCGGC TTTTTGGTCG CCTTCCCAAA AAAGCCGAAC TGATTTTTAT GCGTCCCAAG CCCCGCCGAG TGGTCTGGAA CATGGAGCAG GTGCAAGTTT CCGATCTGGA ACAACTTGTG ACCGAGGCAA TCCATCAGTT GGATGCGGCA CAGGCTTCGA GCTCATTCTG A
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Protein sequence | MSTPRYTPQQ TRALTEKSVS IALSAGAGCG KTFVLTRRFL GYLKPGPEQY PLTSLVAITF TDKAAREMRD RVRATCLQRV RECPPEEADH WLSLLRDLDR ARISTIHSFC GNILRSHAIA SGLDPEFTTL EASVADSLLR QSIEASATRL LVNDQPAFRL LAVDYGIEKL LESSGILVRQ RQLISLADFA EMTAEELAGI WHRWLKETGW PAFVRQIEHQ RTFVRLSEFI SRTSANSPKL DEKLKILRQI MEQLKSQQDS PEPGRLAELF AELSLQARVV GVKPDHWGSP DDHELAKELF TQVRDDCKKL IETIQLAQTE FVPYAEKSLA WLSVAGESIR DYELIKKSRA CVDFDDLLVL SRDLLRNDLT VRQALSRSIR VLMVDEFQDT DPVQADLVEM ICGKELTTGK LFLVGDQKQS IYRFRGADPL VFRSLKSKIP AAGQLPLTIN FRSQPPILHF VNILFRRVMG ADYEALEPSF ADEKPELERI EFLWATTDVV ENKAVQGSIP STVPLAQGLA DEQARDAADA ESQDVENIDD DSRSDSGEKQ TAPFLRRREA DWIARRILEL LADPTPRIRE KSGPWRTIVP GDITILFRAL TNLEVYEQAL EAAGIDYYVA GGRAFFAQQE IYDLAHLCQF LDDPEDGFSL VGLLRSPFFC FSDPLIHRLA SRAGGITQSL FAEASVVSGL SPEETAQVQF AAQTLGSLVE QRDHWPLARI IRRALELTGY EAIVSQEFLG SRKLANVHKA IELARQFDLA GGSRAAFVTQ LRESIDQESR EELAATHPES SSVVRLMSIH QSKGLEFPVV FVADMNRPRK TESLPPTLHP QLGALVTPSN PLGERQKHPV GQFIEIMEEA ASLEEYQRLL YVAATRARDL LILSAGIKGF DEGKFSPWML VLKQVFHLET GLLRNDPWFA SGHEDVKTPQ EIPLIRTHHQ PPQFIDHRVQ RQGVHKLSFP QVWNELELAE SLPWPQLVAD VQRGAEGRRR LSVSRLEEFQ EQSSSKLKSL VPAGELEAHS ASLSRSDAEL LGEMIHGVLE RFEPRAAEES EKALLHRLWL WCQRQPAPPG GQILEQAQQW LKTFASTELI DELAMASELN RELEFSLDWK MTGEEPKRET EIYGLIDVLM KDSQDDWIIL DYKTSRLAAG VTDELLLQPY RLQLGTYALA VQRLFGRLPK KAELIFMRPK PRRVVWNMEQ VQVSDLEQLV TEAIHQLDAA QASSSF
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