| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2729 |
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| Symbol | |
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| ID | 5456710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2933201 |
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| End bp | 2937289 |
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| Gene Length | 4089 bp |
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| Protein Length | 1362 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640878310 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_001413994 |
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| Protein GI | 154253170 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.236319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.466939 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAGT CCTTCACTGG TCGAAAGCGG GTTCGTAAGG TCTTCGGGCA CATTCCGCAG
ATCGCGGAAA TGCCGAACCT GATCGAGGTT CAGAAATATT CATACGACCA GTTCCTGCAG
GTTGATGAAC CGACGGGTGG CCGCGAGGAG CAGGGGCTTC AGGCGGTTTT CAAGTCGGTT
TTCCCGATCA GCGATTTCTC CGAGTCTTCG ACACTCGAAT TCGTGAACTA CGAATTCGAA
ACGCCGAAGT ACGACGTCGA GGAATGCCAG CAGCGGGGTA TGACCTTTGC CGCGCCACTC
AAAGTGACGC TTCGCCTCAT CGTATTCGAA GTCGATGAGG ACACGGGTGC CAAATCCGTC
AAGGACATCA AGGAGCAGGA TGTCTACATG GGCGACATGC CGCTCATGAC GGAGAATGGT
ACCTTCGTCA TCAACGGCAC CGAGCGCGTG ATCGTCTCGC AGATGCACCG CAGCCCCGGG
GTCTTCTTCG ACCACGACAA GGGCAAGACA CATTCGAGCG GCAAGCTGCT GTTTGCTGCG
CGCGTGATCC CCTATCGCGG TTCGTGGCTC GATTTCGAGT TCGACGCGAA GGACATCGTA
TTCGTGCGTA TCGACCGTCG GCGCAAGCTT CCGGTGACGA CGCTGCTTTA TGCGCTGGGT
CTCGATTCCG AAGAAATTCT CAGCACGTTC TACAACAGCG TTACCTTCAC CAAGGTGAAG
CAGGGCTGGC GCGTACCGTT CAATGCAGAC CGCTACCGCG GTGCGAAGCC GGAGCGCGAT
CTGATCGACG CGAAGACGGG CAAGGTTGTG GTCGAAGCTG GCCGGAAGGT TACGCCGCGT
CTCGCGAAGA AGCTCGCGGA AGAGGGGTTG AAGGAACTCC TCGTTCAGGA TGAGGACATC
CATACGCGCT ACCTCGCGCA GGAAATCGTC AACATGGAGA CCGGTGAAAT TTTCGCCGAG
GCCGGTGACG AAATCACGCC CGAGCTTCTG GAAGCGCTGG TCGAGGCTGG CCATACGGAC
ATCATCACGC TCGACATCGA CCATGTGAAC ACGGGCGCCT TCATCCGCAA TACGCTCGCG
GTGGACAAGT GCACGAACCG GGAGCAGGCG CTGATCGACA TCTACCGCGT CATGCGCCCC
GGCGAGCCGC CGACGGCGGA TACGGCGGAA GCGCTGTTCA AGAGCCTGTT CTTCGATGCC
GAACGCTATG ACCTTTCGGC GGTTGGCCGC GTGAAGATGA ACATGCGTCT CGACCTCGAC
GTGTCGGATA CGGTGCGCGT GCTTCGCAAG GAAGACATTC TTGCTGTCAT CAAGACGCTT
GTCGGCCTGC GCGACGGCAA GGGCGAAATC GACGATATCG ACAATCTTGG TAACCGCCGC
GTGCGCTCTG TCGGCGAGCT GATGGAAAAT CAGTATCGCG TTGGCCTGCT GCGCATGGAA
CGGGCGATCA AGGAGCGCAT GTCGTCGGTC GATATCGACA CGGTCATGCC GCACGATCTG
ATCAACGCCA AGCCGGCAGC GGCCGCGGTG CGTGAATTCT TCGGCTCCTC GCAGCTGTCG
CAGTTCATGG ACCAGACGAA TCCGCTTTCG GAGATCACTC ACAAGCGCCG CCTCTCGGCG
CTTGGGCCTG GCGGTCTCAC GCGCGAGCGT GCGGGCTTTG AGGTGCGCGA CGTGCATCCG
ACGCATTATG GCCGCATCTG CCCGATCGAA ACGCCGGAAG GTCCGAACAT CGGTCTTATC
AACTCGCTGG CGACTTTCGC GCGCGTCAAC AAGTACGGCT TCATCGAAAG CCCGTACCGG
CGTGTGAAGG GCGGCAAGCT GGCCGACGAC ATCGTCTACC TCTCGGCGAT GGAAGAAAGC
CGCTATCGCA TCGCACAGGC GAATGTGGCG ATCGGCAAGA AGGGCGAGAT CGAAGGCGAG
CTCGTCAATT GCCGTATCGA TGGCGATTTC GAGATGGTGC CGCCGGACCA GGTGGACTTC
GTCGACGTGT CGCCGAAGCA GATCGTCTCC GTGGCAGCGG CGCTCATCCC GTTCCTCGAG
AACGACGACG CGAACCGCGC TCTCATGGGC TCGAACATGC AGCGTCAGGC CGTGCCGCTC
ATCCGTTCCG AGGCGCCGCT TGTCGGCACT GGCATGGAAG AAGTGGTGGC GCGCGACTCG
GGTGCCGCCA TCGGCGCACG CCGCACCGGC GTCGTCGACC AGGTGGATGC AACGCGTATC
GTTATCCGTG CGACGGAGGA AGTCGATTCC TCCAAGTCGG GCGTGGACAT CTACAACCTG
CGGAAGTTCC AGCGCTCCAA CCAGAACACC TGCATCAACC AGCGTCCGCT GGTGCGTGTA
GGCGATCAGG TAAAGAAGGG CGACATCATT GCGGATGGTC CGTCGACCGA GCTCGGCGAT
CTGGCGCTCG GCCGCAACGT GCTCGTCGCC TTCATGCCCT GGAACGGCTA TAACTTCGAG
GACTCCATCC TCATCTCCGA GCGTATCGTT CGCGACGACG TGTTCACGTC CATCCACATC
GAAGAGTTCG AAGTGATGGC GCGCGACACG AAGCTCGGGC CGGAGGAAAT CACGCGCGAC
ATTCCGAACG TCGGTGAAGA AGCGCTGAAG AACCTCGACG AAGCAGGCAT CGTCTATATC
GGCGCGGAAG TGAACCCCGG CGATATTCTC TGCGGCAAGA TTACGCCGAA GGGCGAAAGC
CCGATGACGC CGGAAGAAAA GCTTCTGCGC GCCATCTTCG GTGAAAAGGC GTCCGATGTG
CGCGACACAT CGCTCCGCTT GCCGCCGGGC GTTCAGGGCA CGGTTGTCGA AGTGCGTGTG
TTCAACCGTC ATGGTATCGA CAAGGACGAA CGCGCGATGG CGATCGAGCG CGAGGAAATC
GAACGTCTCG CGAAGGACCG CGACGACGAA TTCGGTATTC TCGATCGCAA CGTCTATGGC
CGCCTCTCCG AAATCCTGCT CGGCAAGCAG ATCGCTTCGG GCCCCAAGGG CATGGAAGCG
GATGCCAAGG TAACGCAGGC AAATCTTGAC GATCTCAGCC ACGGTCAGTG GTGGCAGATC
GCTCTCAAGA ACGAGAAGGC TCAGAGCGAA ATCGAAGCGC TGAAGAAGCA GTACGACGAA
AGCAAGGAGC GTCTCGAAGC GCGCTTTGCC GACAAGGTCG ACAAGCTGCA GCGCGGCGAC
GAGCTGCCGC CTGGCGTCAT GAAGATGGTG AAGGTTTTCG TTGCCGTGAA GCGCAAGCTG
CAGACCGGCG ACAAGATGGC CGGCCGTCAT GGCAACAAGG GCGTGATCAG CCGTATTGTT
CCGATGGAAG ACATGCCCTA TCTCGATGAT GGTCAGCCTG TCGACATTGT GCTCAATCCG
CTTGGTGTGC CGAGCCGCAT GAATGTCGGC CAGATTCTGG AAACCCATCT CGGGTGGGCG
TGTGCGGGCC TCGGCAAGAA GATCGAAGTC GCGCTTGATG CCTATCACCG CGAGAACAAA
CCGAAAGAGC TGAAGGATCT CGTCAAGCAG ATCTACGGCG ACGATCCGAC GGTGGCTTCG
CTCGATGAGG AACAGCTTGT CGAGATGGCG GGCAACCTGA CAAACGGTGT GCCGATCGCA
ACGCCCGTTT TCGACGGTGC GCGCGAGCCT GAAATCGTCG AGATGCTGGA ACTGGCGGGT
CTCGATCGCT CGGGACAGGT CACGCTTCAC GACGGACGCA CGGGTGAACC TTTCGACCGC
AAGGTCACGG TGGGCTACAT CTATATGCTC AAGCTTCACC ATCTTGTGGA CGACAAGATC
CACGCGCGTT CCATCGGACC GTACTCGCTC GTTACCCAGC AGCCGTTGGG AGGCAAGGCT
CAGTTCGGCG GTCAGCGCTT CGGTGAAATG GAAGTGTGGG CGCTCGAAGC CTATGGCGCC
GCCTACACGC TGCAGGAAAT GCTGACAGTG AAGTCGGACG ACGTGGCTGG CCGTACAAAG
GTCTATGAGG CCATCGTGCG TGGCGACGAT ACGTTCGAGG CCGGTATCCC AGAGAGCTTC
AATGTGCTCG TGAAGGAAAT GCGATCGCTC GGCCTCAACG TTGAGCTGCT CACGCCGGCA
GCGAACTGA
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| Protein sequence | MTQSFTGRKR VRKVFGHIPQ IAEMPNLIEV QKYSYDQFLQ VDEPTGGREE QGLQAVFKSV
FPISDFSESS TLEFVNYEFE TPKYDVEECQ QRGMTFAAPL KVTLRLIVFE VDEDTGAKSV
KDIKEQDVYM GDMPLMTENG TFVINGTERV IVSQMHRSPG VFFDHDKGKT HSSGKLLFAA
RVIPYRGSWL DFEFDAKDIV FVRIDRRRKL PVTTLLYALG LDSEEILSTF YNSVTFTKVK
QGWRVPFNAD RYRGAKPERD LIDAKTGKVV VEAGRKVTPR LAKKLAEEGL KELLVQDEDI
HTRYLAQEIV NMETGEIFAE AGDEITPELL EALVEAGHTD IITLDIDHVN TGAFIRNTLA
VDKCTNREQA LIDIYRVMRP GEPPTADTAE ALFKSLFFDA ERYDLSAVGR VKMNMRLDLD
VSDTVRVLRK EDILAVIKTL VGLRDGKGEI DDIDNLGNRR VRSVGELMEN QYRVGLLRME
RAIKERMSSV DIDTVMPHDL INAKPAAAAV REFFGSSQLS QFMDQTNPLS EITHKRRLSA
LGPGGLTRER AGFEVRDVHP THYGRICPIE TPEGPNIGLI NSLATFARVN KYGFIESPYR
RVKGGKLADD IVYLSAMEES RYRIAQANVA IGKKGEIEGE LVNCRIDGDF EMVPPDQVDF
VDVSPKQIVS VAAALIPFLE NDDANRALMG SNMQRQAVPL IRSEAPLVGT GMEEVVARDS
GAAIGARRTG VVDQVDATRI VIRATEEVDS SKSGVDIYNL RKFQRSNQNT CINQRPLVRV
GDQVKKGDII ADGPSTELGD LALGRNVLVA FMPWNGYNFE DSILISERIV RDDVFTSIHI
EEFEVMARDT KLGPEEITRD IPNVGEEALK NLDEAGIVYI GAEVNPGDIL CGKITPKGES
PMTPEEKLLR AIFGEKASDV RDTSLRLPPG VQGTVVEVRV FNRHGIDKDE RAMAIEREEI
ERLAKDRDDE FGILDRNVYG RLSEILLGKQ IASGPKGMEA DAKVTQANLD DLSHGQWWQI
ALKNEKAQSE IEALKKQYDE SKERLEARFA DKVDKLQRGD ELPPGVMKMV KVFVAVKRKL
QTGDKMAGRH GNKGVISRIV PMEDMPYLDD GQPVDIVLNP LGVPSRMNVG QILETHLGWA
CAGLGKKIEV ALDAYHRENK PKELKDLVKQ IYGDDPTVAS LDEEQLVEMA GNLTNGVPIA
TPVFDGAREP EIVEMLELAG LDRSGQVTLH DGRTGEPFDR KVTVGYIYML KLHHLVDDKI
HARSIGPYSL VTQQPLGGKA QFGGQRFGEM EVWALEAYGA AYTLQEMLTV KSDDVAGRTK
VYEAIVRGDD TFEAGIPESF NVLVKEMRSL GLNVELLTPA AN
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