Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2533 |
Symbol | |
ID | 5455565 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 2734026 |
End bp | 2735057 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640878110 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001413799 |
Protein GI | 154252975 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.66716 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 0.672833 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACCAAGC GTATGATCTG GACCGGCGGT GCGGTTGTGC TGGCGGTTCT TGTGGTTGCT GGAGCCTTTT TCCTGTTTCT GAGAGCGCCT GCCGCTGTTG TCGTGACGCC TTTCCGTGGA ATGGCGGTAG AGGCGGTTTA CGCGACCGGT ACTGTCGAGC CGGTAAACTA CGCGCGGGTT GGAGCAAAAA TTTCCGGACG TATCACCAAT GTGCTGAAGC GCGAAGGCGA GCCCGTGGAG AAGGGCAACA TACTAGCGAT CATCGAACTG GGTGAGGATA TCTCTCGAGT GCATGAGCTC GAAGCACGAC TCAAACTAGC AAATGCGGAT CTCGACAGGG CGCGTACGTT ACGGCGATCG GGAAATGTCA GCGAAGCGGC GCTCGACCAG GCGCAAAGCG CACAATCCGC CACCGCAGCG GCCCTACGCG GCGCAAAGGC GAGGCTTGAC GATCATTTCA TCACCGCACC TATGGCCGGA ACCGTGTTGC GCTCCGAAAG CCAGATCAGG GTCGGGGACA TGGCGCAGCC GGGGCACGTT CTCTTCATGG TCGGCGATAC GGCGGAGTTG CAGATCGACG CCGAGGTAGA TGAGGAGGAC ATTACCAAGG TTGCGCCGGA ACAGGAGGCG CTGATCCGCG CAGATGCCTT TCCGGGCCGG GCGCTCAAAG GCACGGTAAA AAGGATTACG CCTTATGGCG ATCCCGTGGG CCGCACCTAT CGTGTCTACA TCTCTCTTCC CGCGGATACG CCGCTGATTT CCGGCATGAC GACGGAAATC AATATCGTTG TGCGACGTGA GGAAGAGGCC TTGCTGGTGC CGGTATCCGC GCTGTCGGGA AACTCGGTCT GGACCGTCTC CGGCGGCAGG GCGCGACGGG TGGAGGTCGA GCTGGGCGCG GTTGGCAGCG ATACGGCGGA AATTCTCTCC GGTCTCCCCG AGGATGCGCT GGTCATCGCG AATCCTTCAT CCGGTATCGC GGAGGGCGAC AGGGTGCGCG CCGAACAGGC TGCGCCTGAC GGAACGTCCT AG
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Protein sequence | MTKRMIWTGG AVVLAVLVVA GAFFLFLRAP AAVVVTPFRG MAVEAVYATG TVEPVNYARV GAKISGRITN VLKREGEPVE KGNILAIIEL GEDISRVHEL EARLKLANAD LDRARTLRRS GNVSEAALDQ AQSAQSATAA ALRGAKARLD DHFITAPMAG TVLRSESQIR VGDMAQPGHV LFMVGDTAEL QIDAEVDEED ITKVAPEQEA LIRADAFPGR ALKGTVKRIT PYGDPVGRTY RVYISLPADT PLISGMTTEI NIVVRREEEA LLVPVSALSG NSVWTVSGGR ARRVEVELGA VGSDTAEILS GLPEDALVIA NPSSGIAEGD RVRAEQAAPD GTS
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