| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1987 |
|---|
| Symbol | |
|---|
| ID | 5454896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 2170469 |
|---|
| End bp | 2171320 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640877563 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001413258 |
|---|
| Protein GI | 154252434 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 98 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAAAG CGACTGTCCT CAGCGAAGGT GCCGTTTCGG CGGTCGATTA CCGGTGCCCG
GCGGGCCCGG CCGGGGCGCC CTATGCCGAA TGCCATGAGG TCTTCTCGAT TTCCTATGTA
CGGAAAGGCT CGTTCGGCTA CCGGGCGGGC GGGCAGACCC TCGAGATGGT GGCGGGCTCG
GTGCTGGTGG GGCACCGGGG GGATGAATAT ATCTGCACAC ACGACCACCA TGTCTGCGGC
GACGAATGCC TGGCCTTCCG GCTCGACGAG GAACTGGCCG ACACGGTGAG CGGCCGGCCG
GAGCTGAGGC GGCTCGCGGC GCTGCCGCCA CTGCCGGAAA TGATGGTGCT GGGGGAACTG
GCGCAGGCCG CCGCCGAGGG GCGGAGCGAC ATGGGTCTGG ACGAGGCGGG GCTGATGTTT
GCCGGCCGCT TTGCGGAGAT CGCCACAGGC CGCAAGGCAG GCAAGGTGAC GGCGAGCGCG
CGGGACAGGA AACGCGCCGT CCACGCCGCC ATGTGGATGG ATGAATATGC ACACCGGCAA
ATCGGCCTTG AAGGCGCGGC GCGGGAAGCG GGCCTCAGCC TCTATCACTT TCTCCGCACC
TTCACGAAAG TGCTGGGCGT GACGCCGCAT CAATATCTCC TGCGCGCGCG GCTGCGCCGC
GCGGCAAGCC TGCTGGCCGA CAGGGAACGC TCCGTCACCG ACATTGCCTA TGATGCCGGC
TTCGCCGACC TGTCGAATTT CATTCGCACC TTCCGCCGCG CGGCGGGAAT TCCGCCCGGC
CGCTTCCGCG AGGCTGCGCG GGGCGAGCGC AATTTACTCC AAGCGAGATT GGCGCCGCCC
GCCGCAAAGT GA
|
|---|
| Protein sequence | MVKATVLSEG AVSAVDYRCP AGPAGAPYAE CHEVFSISYV RKGSFGYRAG GQTLEMVAGS
VLVGHRGDEY ICTHDHHVCG DECLAFRLDE ELADTVSGRP ELRRLAALPP LPEMMVLGEL
AQAAAEGRSD MGLDEAGLMF AGRFAEIATG RKAGKVTASA RDRKRAVHAA MWMDEYAHRQ
IGLEGAAREA GLSLYHFLRT FTKVLGVTPH QYLLRARLRR AASLLADRER SVTDIAYDAG
FADLSNFIRT FRRAAGIPPG RFREAARGER NLLQARLAPP AAK
|
|---|
| |