Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0817 |
Symbol | |
ID | 5457021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 886521 |
End bp | 888410 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640876388 |
Product | ABC transporter related |
Protein accession | YP_001412097 |
Protein GI | 154251273 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.527463 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGACG CGCGGCCGGA AAAGAAAACA CGCGACTACA CCATCTTCGA CGACGAGATG GAGACGCGCG GCTTCGATTT CGGGCTGATC GTCCGGCTCA TGCGCTGGAT GCGGCCATAT CGAAGGCAGG GGCTGATCGC GCTCGTCTTC GTTCTGCTGG CAGCGAGCGC GGCTGTGCTT GCCCCTGTCG TGGTTAGCCG CGTGGTTGTC GACGGCATTC TGCTGCCGAC TTCCGACGCC GGTGCGCCGG ATTTCGGTCA GAAGGCCCTC AACGCTTTTC TTTCCAGTCT CCTCGACCTT CATCCGATCG TTGCCGCCTG CATTCTCTAT GGCGTGTGGA CGGTTCTCTG GGCGGCATTC GGACACGGCT TCCGCGTCAT GCTGGCGCGC ACCGTACTCA ATGGATTGCG CGACCTGAGG CGCGACCTCT TCGCGCATCT CGAAACGCGT CCTTCAAGTT TCTATGACCG CGTCGCCGTC GGCCGCGTCA TGACGCGCCT TACCAACGAC ATCGAAACGC TGTTCGAGCT GCTGGCGGGA TTTGGCGTGC TGCTTGGTGA ATTCGTGCCG TTCTTTGTCG CCGTTTCGAT CATGCTGGCA CTCAACCCCA CGCTGACATT CGAGTTGATG CTGCTGCTGC CGCTCGCCGC GCTTGCTACA TGGGCCTTCC GTATCGTCTC GCGGCAGGTC TATCGCGGCA TCCGCTCCAC CATGTCGCGC CTCAACGAGA ACCTGCAGGA AAACCTGTCG GGTATCGAAG TGGTGCAACT ATATGGCCGC GAGGAGATCA ACTTTCAGCG CTATACCGGC ATCAATGAGG AAAACCGCGA ACAGGAAAAT CTCGCCGTCC GGATCGAAAG CTATTATGGC CCGGCGATGG ACAGCATGGC CTTTCTCGCC ATGGCGGCCA TCATCTGGTT CGGCGGGCAG CATGTGTTCG AAGGCGCGGC GACGCTTGGC AGCGTCATCC TCTTCGCACA ATTTGCCGAT ATGATGTTCC GGCCCATCGT GGCGATGGGT GAACAATGGA ACGTCGTCTT TCGCGCCATG GCGAGTTGCG AGCGGATATT CCAGGCTCTC GACTGGGACG AGGCATTGAA GGAGCCGGAA GAGCCGAAGC CGCTGCCGAA AGACCTGAAA GGCCAGGTGA CGTTCAACCA TCTGACCTTC GGCTACACGC CAGGCACGAC GATCCTGAAA GATGTCAGCT TCGACATCAA GCCGGGCGAG CGCATCGCCA TCGTAGGACC GACAGGTTCC GGCAAGACGA GCCTCATCCG CCTGCTCTGC CGCTTTTACG ATGTGCCGGC AAACTCCATC CTGATCGACG GCATCGACAT CATGGATGTG ATGCCGTCCG AAATCCGGCA ACGGGTCGGC GTCGTGCTGC AGGATTTTCA TATTTTCTCC GGCACGGTCT ACGACAATAT CGCGCTTGGA AACCCTGCGA TCACGCGCGA GATGGCCCGC GAGGCGGCGC GGCTCGTGCA TGCGGATCCT TTCATCCGCA CCTTGCCGCA AGGCTACGAC ACGATGTTGA CGGAGCGCGG GCGCAATCTC AGCCATGGCC AGCGGCAGCT TCTCGCATTT GCGCGCGTGC TGGCGATGAA CCCCGAAGTG CTCGTTCTCG ACGAAGCAAC CGCGAGCATC GATACGGAAA CCGAACTCGT CATCCAGGAT GCACTTTCCA AAGTCACGCA GGGGCGCACC TCGATCATCA TCGCGCATCG ACTTCAGACG ATTCGTGAAG CAGACCGCAT CGTCGTGCTC GCCGGTGGCG AAGTGCGCGA AATCGGCAGC CACGATGAAC TGATTGCCAT AGGCGGTCTT TACAAAACGC TTTATGAGCT TCAAGTTCAG GACGTGGCCG GCACGAGCAA GAACATCTGA
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Protein sequence | MSDARPEKKT RDYTIFDDEM ETRGFDFGLI VRLMRWMRPY RRQGLIALVF VLLAASAAVL APVVVSRVVV DGILLPTSDA GAPDFGQKAL NAFLSSLLDL HPIVAACILY GVWTVLWAAF GHGFRVMLAR TVLNGLRDLR RDLFAHLETR PSSFYDRVAV GRVMTRLTND IETLFELLAG FGVLLGEFVP FFVAVSIMLA LNPTLTFELM LLLPLAALAT WAFRIVSRQV YRGIRSTMSR LNENLQENLS GIEVVQLYGR EEINFQRYTG INEENREQEN LAVRIESYYG PAMDSMAFLA MAAIIWFGGQ HVFEGAATLG SVILFAQFAD MMFRPIVAMG EQWNVVFRAM ASCERIFQAL DWDEALKEPE EPKPLPKDLK GQVTFNHLTF GYTPGTTILK DVSFDIKPGE RIAIVGPTGS GKTSLIRLLC RFYDVPANSI LIDGIDIMDV MPSEIRQRVG VVLQDFHIFS GTVYDNIALG NPAITREMAR EAARLVHADP FIRTLPQGYD TMLTERGRNL SHGQRQLLAF ARVLAMNPEV LVLDEATASI DTETELVIQD ALSKVTQGRT SIIIAHRLQT IREADRIVVL AGGEVREIGS HDELIAIGGL YKTLYELQVQ DVAGTSKNI
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