| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0138 |
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| Symbol | |
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| ID | 5454433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 152403 |
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| End bp | 155873 |
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| Gene Length | 3471 bp |
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| Protein Length | 1156 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640875698 |
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| Product | double-strand break repair helicase AddA |
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| Protein accession | YP_001411418 |
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| Protein GI | 154250594 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 0.727377 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTCCC TGACGAAAAA GCCCTCGGAA ACGGATGACG CGCAGCGCCG CGCCTCTCAC
CCGGAAACCT CAGTTTGGGT TTCGGCCAAT GCCGGCTCTG GCAAAACCCA CGCGCTGACG
ACCCGCGTGG CGCGGCTGCT GCTTGCCGGC ACCGACCCTC AGCGCATTCT CTGCCTGACT
TTCACCAAGG CCGCGGCGGC TGAAATGTCC GCCCGGCTTT ACAAGCGTCT TGGCGAGTGG
GCGATGATGT CCGATGAGGC GCTCGCCGAA GAAATCCTTG AGGTCGAGGG CACAGCACCT
GATACGGCGA AGCTCAGAGG GGCTGGCCAA CTTTTCGCCC GCGCCATCGA GACGCCGGGA
GGATTGAAAA TCCAGACGAT CCACGCTTTC TGCGAGAGAC TTCTCGGACG CTTCCCGCTG
GAAGCCGACG TGCCGCCGCA GTTCGAAATT CTCGACGAAC GAGCCGCACA GGAATTGATG
GACGAGGTGC GTGACGCCGT CCTTCGTCGC GCAGGCGGTG AAGCGGATAC CGCTCTTGGC
CAGGCGCTGT CCCATGTCGT TTCGCGGGTG GACGAACTTG CGTTCGGCAA GCTGCTGAAG
GAAGTGACGG ATCAGCGCGG CAACTTCGCC AAGATGATGG ACCGCTTCGG TGGCCTCGCC
GGTATCCACG CGGCAATCCG CATCGCACTC TCTGTTGGTG CCGATGAAAC CACGCCGGGC
ATACGGGTTG AAATTGCGGC TCTTCCCGAG GCGGCAATGC ACAACGCCGC CGAAGTTCTC
GCGAGCGGCA CCAAGACGGA CGTCAAATGC GCGGAAGCGC TACGCGCATT TCTCGGCGCG
CGTGCCAGCC GGGCAGAAAA TCTCGACACC TATCTCGGTA TCTTTCTGAC GAAGGAGATG
AAGCCGCGCG CACGCCTTGT AACGGCAGCC CTCGCAAAGA AGCATCCGGA TGTCGAGCAG
GAATTGCTCG CCGAACAGGA ACGCATCATC CGCCTTCATG CCCGGCTGCG CGCCATTGGC
GTCGCCGAGG CGACCGAAGC CATTGTGACG CTTGCCGTCG AAATTCTCGA GACATTCGAC
AAGGCGAAAC ATGCGCGCGC GTTACTCGAC TATGATGACC TCATTTCGAA GACCCGTGAT
CTCCTCACCA TGCGCGCCAT GGCGCCCTGG GTGCTCTACA AGCTCGATGG CGGCATCGAT
CATATTCTGA TTGATGAAGC GCAGGATACG AGCCCCGAAC AATGGGACAT TATCGCGCGC
CTTGCCGATG AGTTTCTGTC CGGCAGCGGC GCGCGTGGAG TCGTGCGGAC GATTTTCGCG
GTCGGGGATG AAAAGCAATC CATCTTTTCG TTTCAAGGCG CCGATCCGGC GCGCTTCGAC
GACATGAAAA TCTACTTCGA GAGGCGCGTT AAAGCATCCG AGCAGAGGTG GGACTATGTG
CCGCTTACAC GTTCTTTCCG CTCTGTGCCC GAAGTGCTTG CCGCTGTCGA CAAGGTGTTT
GAATCGCTGA AGGCCCGCAG CGGCCTCACC GCTTCCGGAA ATCTCGACAT TCACATCGCC
CACCGTGAGC TTGATGCAGG GCTGGTTGAG ATTTGGGAGC TTGAAGAGCC CGATGAGGGT
CAGGAAGCGA GCCCTTGGGA TGCACCGCTC GACTACATGA CCGAAGCGGC GCCTATGGCG
AAGCTTGCCG CGCGTATCGC AGCGACCATC CGCAATTGGC TCGACAGCAA GGAAGTTCTG
ATTTCAAAGG GCCGCCCGAT CCGTGCGGGC GATATTCTGA TCCTGGTAAG GCGGCGTAAC
GCATTCGTCG GAGAAATGGT ACGGCATCTG AAGGAACTTG GCGTTCCTGT TGCCGGTGCG
GATCGCATGG TCCTGACGGA GCAGCTCGCC GTCATGGATC TGCTCGCACT GGCCCGCTTC
GTTTTGCTGC CGGAAGACGA CCTGACTCTG GCAACGGTAC TCAAAAGCCC GTTTGCGGGA
TTCACCGAAG AAGAAGTTTT CGATCTGGCG TGGAATCGCA AGGGGACTCT CTGGCAGTCT
CTCAAGGAAA AGGCAACCAG AAACCCGCGC TACGCTGAGG CGGCAGCTTT TCTTCTGCGC
CTTCTCGAAC GCGCCGACTA CGAGCCGCCT TACGAGTTCT TTGCGCATGT GCTCGGAGGC
GAAGGAGGAC GTACGCGTCT TCTCGCCCGG CTTGGTCCGG AAGCGGCTGA TCCCATAGAT
GAGTTTCTGT CGCTTGCTTT GGAATTCGAA CGAAAGCATC CACCGGCTCT CGAAGCTTTT
GTGCATTGGC TGGAGCGCGG CTCTTCCGAA ATCAAACGCG ACATGGATCA GGGCCGCGAC
GAAGTTCGCG TCATGACGGT TCACGGCGCG AAAGGTCTGG AAGCTGAAAT TGTTTTCATG
CCGGATACCT GCGCAGCTCC CGGCGGCTCT CATGATCCGG CCTTGCTGTC TCTTCCGGCC
CTGGAACAGG ATGGCCCGAA GCTCCTCCTC TGGCCTGTAC GCAAGAAGGA CGAAGATGAG
GTGAGCGCGG GAGCGCGCGC ATTGCACCGT GAAATCCAGG CTGCCGAATA CCGGCGCTTG
CTCTATGTCG CACTGACCCG TGCACGCGAC CGGCTCTATA TATCCGGCTA CCGCAATGCT
ACGCCGCCCT CCTCTGAGTG CTGGTATGAA ATGGTGTGCG AAACACTGAA GCCTGCGGCT
CGTGAAATTG TGTTGCCCGA CGGGCGCATG GTCTGGCGCA TCGAAGGAGA GCAACGGCGG
CAAGTTGATA GCAAGGCGCC GTCGGCAGCG GAGGAACCCT CGGCGCCGCC GGAATGGGCG
CATCGTGACG CGCCGTTGGA GCCGACGCCT TCAAGGCCCT TGGCGCCATC CCGTCTGCCG
CCGGAAGATT TGGAAGAGCC TTCGGTGCTG TCGCCCTTGG CCGGCGACAA CACGAATCGC
TTTCGCCGCG GGAGCCTCAT TCATCGTCTG CTTGAAAGTT TGCCCGACAT GGAGCCGGCC
GAAAGGCGGG CGGCCGCGCG GCGTTTTCTG GCGCAACCTG CTCATGGGAT CGATGAAGCC
GCGCAAAATG AAATCGAAGC CGCCGTCTTC CGCGTTCTGG ACGACGCAAC GATTGCCCAT
GTCTTCGGGA AAGGCAGCCG TGCGGAGGTG CCGGTCGCGG GCACGATAGA ATTGGGCGGC
CGTCCGCTGC TCATCGCAGG CCAGATCGAC CGCCTTTGCG TGACGGAGGA CAGCGTCACG
ATCATCGATT ACAAAACCAA CAGGCCGCCG CCGCAAACGC TCGAAGCGGT CGTCCCTGCC
TATATCGGCC AGATGGCTGC TTACCGGGCA TTGCTCGCGG CGATTTATCC CGAACGAATG
ATTCGGTGTG TTTTGCTCTG GACGGACGGA CCTGCACTCA TGGAATTACC CGCTGAAATG
CTGGAGAAAG CGCTCAGGGC AGCCAAGCCT GTGGCAATCC GGCAGCCTTG A
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| Protein sequence | MSSLTKKPSE TDDAQRRASH PETSVWVSAN AGSGKTHALT TRVARLLLAG TDPQRILCLT
FTKAAAAEMS ARLYKRLGEW AMMSDEALAE EILEVEGTAP DTAKLRGAGQ LFARAIETPG
GLKIQTIHAF CERLLGRFPL EADVPPQFEI LDERAAQELM DEVRDAVLRR AGGEADTALG
QALSHVVSRV DELAFGKLLK EVTDQRGNFA KMMDRFGGLA GIHAAIRIAL SVGADETTPG
IRVEIAALPE AAMHNAAEVL ASGTKTDVKC AEALRAFLGA RASRAENLDT YLGIFLTKEM
KPRARLVTAA LAKKHPDVEQ ELLAEQERII RLHARLRAIG VAEATEAIVT LAVEILETFD
KAKHARALLD YDDLISKTRD LLTMRAMAPW VLYKLDGGID HILIDEAQDT SPEQWDIIAR
LADEFLSGSG ARGVVRTIFA VGDEKQSIFS FQGADPARFD DMKIYFERRV KASEQRWDYV
PLTRSFRSVP EVLAAVDKVF ESLKARSGLT ASGNLDIHIA HRELDAGLVE IWELEEPDEG
QEASPWDAPL DYMTEAAPMA KLAARIAATI RNWLDSKEVL ISKGRPIRAG DILILVRRRN
AFVGEMVRHL KELGVPVAGA DRMVLTEQLA VMDLLALARF VLLPEDDLTL ATVLKSPFAG
FTEEEVFDLA WNRKGTLWQS LKEKATRNPR YAEAAAFLLR LLERADYEPP YEFFAHVLGG
EGGRTRLLAR LGPEAADPID EFLSLALEFE RKHPPALEAF VHWLERGSSE IKRDMDQGRD
EVRVMTVHGA KGLEAEIVFM PDTCAAPGGS HDPALLSLPA LEQDGPKLLL WPVRKKDEDE
VSAGARALHR EIQAAEYRRL LYVALTRARD RLYISGYRNA TPPSSECWYE MVCETLKPAA
REIVLPDGRM VWRIEGEQRR QVDSKAPSAA EEPSAPPEWA HRDAPLEPTP SRPLAPSRLP
PEDLEEPSVL SPLAGDNTNR FRRGSLIHRL LESLPDMEPA ERRAAARRFL AQPAHGIDEA
AQNEIEAAVF RVLDDATIAH VFGKGSRAEV PVAGTIELGG RPLLIAGQID RLCVTEDSVT
IIDYKTNRPP PQTLEAVVPA YIGQMAAYRA LLAAIYPERM IRCVLLWTDG PALMELPAEM
LEKALRAAKP VAIRQP
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