Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3986 |
Symbol | |
ID | 8255120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 4809986 |
End bp | 4810855 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644937650 |
Product | helix-turn-helix- domain containing protein AraC type |
Protein accession | YP_003094239 |
Protein GI | 255533867 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.542106 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATTC AGCGAGAAAT TACCCCTTTG ACGCAAAGTG ATTGCTTTAC CTTATTTTCA AGACGTAAAA AGCAATTTGA CTTCCCTCTG CACTATCATG AAGAGTACGA GCTTAACCTG ATTCTCAATG CAAAAAATGC AAAAAGGATT GTCGGCAACC ATATTCACCT CATAGATGAC CTAGAACTTG TATTTGTAGG CCCCAATCTC AGTCATGCGT GGTTTACACA TGAATGTAAA TCTTCGGAGA TTATTGAAGT CACCATTCAG TTTCACAAGG ATTTTCTGGA CGAAACGATC TTGAGAAGAA ATCAGTTGAG CTTTATCCGA AACCTCTTCG AAAGATCAAA AAAAGGCATT GCCTTTTCTA CTGAGACCAT TAAAGCCATT AAACCGAGAA TACTCGATCT ATGCCAGAAA AACGGCTTCG ATTCGGTTCT CGAACTGCTA TCGATTCTGC ACGATTTGTC CATTTCCAGA AATATGGTGA CTCTATCTGA TGCGGCTTTT ATCAACCAGC ATTCCAGTTA CAATAGTAGA AGGATCGAAA AGGTATTTGA ATACCTAAAT GCCAACTACA GTAAGCAGAT TACTTTAGCT GATGTAGCCA AAATCACCAA CATGCCTGAT GTATCATTTA GCCGCTTTAT CAAAAAGAGA ACCGGAAAGA CATTTATCGA TAGCCTGAAT GAAATCAGGT TAGGCCATGC CAGCAGATTA CTTATAGATA CCACCACTAC AATATCGGAA ATAGCCTATA GCTGTGGCTT CAATAATATA TCCAACTTCA ACCGCATTTT TAAAAGGAAA AAGAATACAA CTCCAAAGCA GTTCAGAGAT AATTATTCCG GAACCAGGGT TTTTATTTAA
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Protein sequence | MNIQREITPL TQSDCFTLFS RRKKQFDFPL HYHEEYELNL ILNAKNAKRI VGNHIHLIDD LELVFVGPNL SHAWFTHECK SSEIIEVTIQ FHKDFLDETI LRRNQLSFIR NLFERSKKGI AFSTETIKAI KPRILDLCQK NGFDSVLELL SILHDLSISR NMVTLSDAAF INQHSSYNSR RIEKVFEYLN ANYSKQITLA DVAKITNMPD VSFSRFIKKR TGKTFIDSLN EIRLGHASRL LIDTTTTISE IAYSCGFNNI SNFNRIFKRK KNTTPKQFRD NYSGTRVFI
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