Gene Pcar_2000 details

Gene Information

• Locus tag: Pcar_2000
• Symbol: ychF
• ID: 3724690
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 2330870
• End bp: 2331964
• Gene Length: 1095 bp
• Protein Length: 364 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 637751601
• Product: GTP-dependent nucleic acid-binding protein EngD
• Protein accession: YP_357411
• Protein GI: 77919596
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0012] Predicted GTPase, probable translation factor
• TIGRFAM ID: [TIGR00092] GTP-binding protein YchF

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 0.0365484
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGATTCA AGTGTGGCAT CGTTGGGTTG CCCAACGTAG GTAAATCGAC TATTTTCAAC 
GCCATCACCT CGGCAGGGGC CGAATCGGCG AATTACCCCT TCTGTACCAT CGAACCGAAT 
GTCGGCGTGG TGTCGGTACC CGATCCGCGT CTTGATGTCC TGGCGGATAT CGTGCAACCG 
CAGCGTGTGC TTCCCACGAC TATTGAGTTT GTCGATATTG CAGGCCTCGT GCGCGGCGCC 
AGTCAGGGCG AAGGACTGGG CAATCAGTTT CTCGGACATA TCCGTCAGGT CGACGCTATT 
GCCAATATTG TCCGTTGCTT CGATGATGAT AATGTGGTGC ACGTGGACGG TTCTGTCGAT 
CCCATGCGCG ATATCGAAGT CATTCAGACC GAACTTAACC TGGCCGACCT GGATACCGTT 
GAAAAGCGTC TGTTTCGCAT TCAGAAACAA GCCAAGAGCG GCGATAAGGA TATGCTTGCG 
CAGCAGGAGG TGTTGCTGCG GGTTCGAGAG GTTCTCGATG CCGGCAAACC GGCACGCTCT 
GCCGGATTGT CGTATGAGGA CCAACGTTTG ATATCAGATC TGCATCTGAT TACCGCCAAG 
CCCGTGTTGT ATGTGGCCAA TGTCGCCGAA GACGACCTTG AGGGCGAACA TCCGCATGTC 
GCTCGGGTGC GGGAGTATGC GGCCGAAGAG GGCGCTGAAG TGGTGGCTAT CTGCGGCAAG 
ATCGAGTCGG AGATAGCAGA GCTGGAAGGG GACGAAAAAC AGGAATTTCT GCAGGAGCTA 
GGTCTGGGAA GCTCCGGTCT CGATCGTATG ATTCAGGCCG GTTACCAGTT GTTGGGGCTG 
ATTACCTATT TTACTGCCGG TGTCCAGGAG GTACGTGCCT GGACTGTGCA TAAGGGCGAC 
CGTGCCCCCC AGGCTGCCGG GGTCATTCAT ACAGATTTTG AAAAAGGCTT TATCCGCGCC 
GAAGTCATTG CCTACGATGA TTTCGTGGCG TGCCGTGGCG AAAGCGGTGC CAAGGAGAAG 
GGGCTGCTGC GGCTGGAGGG CAAGGATTAT GTCGTGCAGG ACGGCGATGT CATGCACTTC 
CGCTTTAACG TTTAG 

 

Protein sequence

MGFKCGIVGL PNVGKSTIFN AITSAGAESA NYPFCTIEPN VGVVSVPDPR LDVLADIVQP 
QRVLPTTIEF VDIAGLVRGA SQGEGLGNQF LGHIRQVDAI ANIVRCFDDD NVVHVDGSVD 
PMRDIEVIQT ELNLADLDTV EKRLFRIQKQ AKSGDKDMLA QQEVLLRVRE VLDAGKPARS 
AGLSYEDQRL ISDLHLITAK PVLYVANVAE DDLEGEHPHV ARVREYAAEE GAEVVAICGK 
IESEIAELEG DEKQEFLQEL GLGSSGLDRM IQAGYQLLGL ITYFTAGVQE VRAWTVHKGD 
RAPQAAGVIH TDFEKGFIRA EVIAYDDFVA CRGESGAKEK GLLRLEGKDY VVQDGDVMHF 
RFNV