Gene Pcar_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_0002 
SymboldnaN 
ID3723012 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp1680 
End bp2798 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content45% 
IMG OID637749581 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_355435 
Protein GI77917620 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value2.59068e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTTT CAATTGAAAA AGAAGTCTTT CTCAAAGGCC TGGCACGAGT ACAGGGAATC 
GTCGAAAAGA AAAACACCAT TCCTATCCTT GCCAACGTAC TCATCGAGGC CGAAGATGAC
CACATACGCC TCACTGCCAC CGATCTCGAA GTCGGCATGA AGGCTTCCTA CCCTGCCAGC
GTCACATCGG CAGGTCGTAT AACCGTATCC GCCAAAAAAC TTTTTGAAAT CATCAAGGAA
CTACCGGAAA AGGAAATATC TTTTACCGCC AAGGAAAATT GTTGGATAGA AATACGCTGC
GGTAAATCGC TTTTCAATGT TGTTGGTCTA TCAGCCGATG AGTTTCCCTA TTTCCCCCAG
ATCGACAAGG AACAATTTTT CCAGATTCCG GGCGATATCC TTAAACGCCT GATTGAAAAA
ACCGCTTTTT CCATGTCGAC GGATGAGAGT AAATACAACC TTAATGGTAT TTACCTTCGT
GCAATGGAAG ATGAGGGTCG CCAGATATTG CGATTTGTGG CCACGGACGG TCACCGTCTG
GCCTTGATGC AAACCCCTCT CGATTGTTCC CATGTGGAAC CATTGGCCAA GGGGGTTATT
TTCCCTCGCA AGGGTGTGTT GGAATTACGA AAAATCGCCG AAGAGGGAAA TGGTGAAGTA
CTGCTTGGTT TTATGGACAA CAATGCGGTT ATCAAAAAGT CCCAAACGGT AATCGTTATG
CGTCTGGTCG ATGGTGATTT TCCCGACTAC AACAGAGTTA TTCCACTCAA TAACGATCTC
AAGGCCAACA TTCCTCGCGA AGAATTTCTA CATGCCTTAC GCCGTATGGC CATATTGTCG
AGTGAAAAGT CAAAAGGTGT CAAAATCGAT TTCCAGGAAA ATCAGCTAAC TTTATCTTCA
TCTAATCCGG AATTCGGCGA TGCCAGAGAA GATTTTGAAA TAGAGTATGC CGAAGGTGAT
CTGTCGATAG GTTTTAATGC ACGTTATCTT ATTGATATTC TTGCAAATTT AGACTCCGAA
AAGGTCTGTT TGTCCCTTCG GGACCAACTG TCTCCGGGAC TGATTACGCC TCTCGATGAT
AACGACTACC TTGCGGTCAT CATGCCAATG AGGCTATAG
 
Protein sequence
MNFSIEKEVF LKGLARVQGI VEKKNTIPIL ANVLIEAEDD HIRLTATDLE VGMKASYPAS 
VTSAGRITVS AKKLFEIIKE LPEKEISFTA KENCWIEIRC GKSLFNVVGL SADEFPYFPQ
IDKEQFFQIP GDILKRLIEK TAFSMSTDES KYNLNGIYLR AMEDEGRQIL RFVATDGHRL
ALMQTPLDCS HVEPLAKGVI FPRKGVLELR KIAEEGNGEV LLGFMDNNAV IKKSQTVIVM
RLVDGDFPDY NRVIPLNNDL KANIPREEFL HALRRMAILS SEKSKGVKID FQENQLTLSS
SNPEFGDARE DFEIEYAEGD LSIGFNARYL IDILANLDSE KVCLSLRDQL SPGLITPLDD
NDYLAVIMPM RL