Gene Pcal_1809 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1809 
Symbol 
ID4909482 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1678654 
End bp1680864 
Gene Length2211 bp 
Protein Length736 aa 
Translation table11 
GC content56% 
IMG OID640125558 
ProductAAA family ATPase, CDC48 subfamily protein 
Protein accessionYP_001056692 
Protein GI126460414 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0464] ATPases of the AAA+ class 
TIGRFAM ID[TIGR01242] 26S proteasome subunit P45 family
[TIGR01243] AAA family ATPase, CDC48 subfamily 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTAGCG AGGTCATTCT AAAGGTAGCT GAGGCTAGGT CACGCGACGT TGGCCGAAGC 
ATTGTGAGAC TCCCCGTGAG AATAATGAGG AAGCTGGGGG TAGAGCCCGG GGACTACGTG
GAGGTTATTG GGAGGAAGTC GGCCTATGCG CAAGTGTGGC CCGCCTACCC CGAGGACGAG
GATAAGGAGA TTATACGCAT GGACGGCATC ATTAGGCAAA ACGCAGGCGT TGGCATAGGC
GACACGGTGA AGGTGCGTAA GGTGCAGTTA AAGCCAGCCC AGAGGGTCGT CCTAGCGCCA
ACAGAGCCTG TGAGAGTAGA CCCCGAGTAC CTAAAGAAGC AAGTGCTACT TGGGAAACCA
ATAGCGCGGG GCCAAGCCAT CGATGTGCCC TTCTACGGCG GTGCCATAAG ATTTGTAGTT
GTGCAGGTAC AGCCGGGGCC AGCCGCTTAC GTCTCCATAG ACACAGAGGT TACGGTGAGA
GAGGAGCCTG TAAAAGAGGC CGAGCTCACA ATACCCAAGG TCACTTGGGA GGATATTGGT
GATTTGGAGG ATGCTAAGCA GAAGATTAGG GAGCTTGTGG AGCTTCCTCT TCGGCATCCT
GAGCTTTTTA AGCACTTGGG GATTGAGCCG CCTAAGGGCA TTCTGCTGAT TGGGCCTCCT
GGCACTGGGA AGACGCTTTT GGCCAAGGCC GTGGCCAACG AGGCTAACGC CTACTTCGTG
GCCATTAACG GGCCTGAGAT TATGTCCAAA TACTACGGCG AGTCTGAGGC TAGGCTGAGA
GAGATCTTCG AAGAGGCTAA GAAGAACGCC CCCGCAATCA TCTTCATAGA CGAGATCGAC
GCCATAGCGC CCAAGAGAGA GGAGGTGACC GGCGAAGTGG AGAAGAGAGT AGTGGCACAG
CTCCTCACCC TAATGGACGG ACTACAAGAA AGAGGACAGG TAATAGTCAT AGGAGCCACA
AACCGCCCAG ACGCAGTAGA CCCAGCGTTG AGAAGACCGG GAAGATTCGA CAGAGAGATC
CACATACCTA TGCCGGACAA GAGGGCTAGG AGGGAGATAT TGGCGGTGCA CACTAGGAAT
ATGCCTCTCT GTACCAAGGC CGATGTAGAA AGCGGCGTGT GCAAGCCCGG CGACGAGGTG
GATTTAGATA AAATAGCCGA GATGACGCAC GGCTACACTG GCGCAGATAT AGCGGCGTTG
GCAAAGGAGG CGGCCATGAG CGCGTTGAGG AGGGCTATTG AAAACCGCTT GATAAACGTG
GACCAAGACG TAATTCCACA GGAGACGCTC AGCAAGCTGA AGGTGGGAAT GTCGGACTTC
TTAAACGCCA TGAAGTACGT GCACCCGACG GTGCTGAGAG AGGTGATAAT CGAAGTGCCA
GAGGTCCACT GGGACGACAT AGGGGGATAC GACTCAATTA AGCAGGAGCT CAGGGAGATA
GTGGAGTGGC CCATGAAGTA TAGACACTAC TTCGACGAGC TGGGCGTAGA GCCCCCCAAG
GGCATACTGT TGTTCGGCCC ACCCGGCGTT GGAAAAACCC TATTCGCCAA GGCGGTGGCT
ACCGAGTCTG GGGCCAACTT CATAGCGGTG AGGGGGCCAG AGCTGTTGTC CAAGTGGGTC
GGCGAGTCGG AGAAGGCCGT CCGCGAGGTG TTTAAAAAGG CCAGGATGGC CGCGCCTTGC
GTCATCTTCT TCGACGAGAT AGACTCAATA GCGCCTGCCA GAGGCACGCG CCTCGGCGAC
TCTGGCGTGA CGGACAGGAT CGTAAACCAG CTCCTCGCCG AGATGGACGG CATAGGCACT
CTGAAAAACG TGGTAGTCAT GGCGGCCACC AATAGGCCCG ACATATTAGA CCCCGCGTTG
CTGAGGCCCG GCAGATTTGA CAGAGTGATA TACGTCCCGC CGCCCGACTT CAAGGCCAGG
GTAGAGATCT TCAAGGTTCA CACGAAGAAG ATAAAGCTGG CCGACGACGT CAACATAGAG
GAGCTCGCCA AGAGGACTGA GGGCTACACT GGCGCAGACA TAGCGGCGTT AGTGAGAGAG
GCGGCCATGC TCGCCCTCCG GGAAGTCATC AGAGAGGGCA AAGTGAAGCC CGTCTCAATG
AGGCACTTTG AGGAGGCCCT AAAGCGGGTG CCGCCGTCTC TCACACCTGA GGACATAAGG
CGGTACGAGG AAATGGCAAA GAGAGTTAGG AGAACAATCG CCGGCCTCTA G
 
Protein sequence
MSSEVILKVA EARSRDVGRS IVRLPVRIMR KLGVEPGDYV EVIGRKSAYA QVWPAYPEDE 
DKEIIRMDGI IRQNAGVGIG DTVKVRKVQL KPAQRVVLAP TEPVRVDPEY LKKQVLLGKP
IARGQAIDVP FYGGAIRFVV VQVQPGPAAY VSIDTEVTVR EEPVKEAELT IPKVTWEDIG
DLEDAKQKIR ELVELPLRHP ELFKHLGIEP PKGILLIGPP GTGKTLLAKA VANEANAYFV
AINGPEIMSK YYGESEARLR EIFEEAKKNA PAIIFIDEID AIAPKREEVT GEVEKRVVAQ
LLTLMDGLQE RGQVIVIGAT NRPDAVDPAL RRPGRFDREI HIPMPDKRAR REILAVHTRN
MPLCTKADVE SGVCKPGDEV DLDKIAEMTH GYTGADIAAL AKEAAMSALR RAIENRLINV
DQDVIPQETL SKLKVGMSDF LNAMKYVHPT VLREVIIEVP EVHWDDIGGY DSIKQELREI
VEWPMKYRHY FDELGVEPPK GILLFGPPGV GKTLFAKAVA TESGANFIAV RGPELLSKWV
GESEKAVREV FKKARMAAPC VIFFDEIDSI APARGTRLGD SGVTDRIVNQ LLAEMDGIGT
LKNVVVMAAT NRPDILDPAL LRPGRFDRVI YVPPPDFKAR VEIFKVHTKK IKLADDVNIE
ELAKRTEGYT GADIAALVRE AAMLALREVI REGKVKPVSM RHFEEALKRV PPSLTPEDIR
RYEEMAKRVR RTIAGL