| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1519 |
|---|
| Symbol | |
|---|
| ID | 4909351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1418696 |
|---|
| End bp | 1420003 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640125268 |
|---|
| Product | periplasmic binding protein |
|---|
| Protein accession | YP_001056404 |
|---|
| Protein GI | 126460126 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000000588293 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAA AAATTACGCT GGGACTAGCC GCGGCTGCGT TGTTAATCTC CATACTGGCA
GTGGCGCTGG CCTGGTCCAC CTCGGCTAAG GTCGAGGAGG CGCTCCACGC GACGGGGCAG
GAGCTGGGGG CTCTCACATC TGCCGTAAAG TCGCTGAACT CCACCCTCGC CTCTCTGGCG
TCTGGGGTTG AGCAGAGGCT GGCCAACGTG GAGAGGGAGG CCGCCGCGGC GAAAAACGCC
ACGGCCATTC TGCTAAAGGC CGCCCAGGCC CCCGCCGGCG AGGTGCCGGT CAAGTACGCC
AAGCTGTTCT CCATAAGGTA CGAGGGGGGC TACTACGTGC TGAGGGACGC CCTCGGCAGG
ACGATACTCC TCGCCCCCAG GGGCGCGGGC CCGGCCCTCA CAAAGTTCTA CGTGGATAAG
TACAAGCCAG CCGCCGTGGT CTACTACCCC GTGCAACGCG CCGTGTACAT GTCCTCTACG
CATGTGGCCA TGGCGTACCG CCTGTACAAG GAGGGCGGCG ATGCCCACGT GCTTAAGTCG
GTGGTGGGCA TAATGTGGGG GAAGGAGTAC GCGTGGCACC TCCCCGAGGT GGCGAAGGCC
CTTGAGAACG GCACAATCAG GGACGTGGGG CCCGCCAGCT CGCCCAACTA TGAGCAAATA
GCCGCGCTGA AGCCAGACGT GGTCTTTGTC TACTTCTACC CCGGCCCCTA CGGCACAGAG
GCGGTGATAC AGCGGCTTGA CCAGTTGAAA ATCCCCTACG CCGTGGTCAA CGAGTTCCAG
GAGGGGTCCC CCCTGGGCAG GGCCGAGTGG ATAAAGTTCA TAGCCGCCTT CTACAACCTC
ACCGACGCGG CCGTCAAAAT CTTCGACGGG GCGGAGGCCA AGTGGAACAG CCTAGCCGCG
TTGGCGAGGG AGGCCGAGCA TAGGCCAAGG GTGGCCTGGT TCATAATATT CGGCGGCGTC
CTGTACCCAG CGGGGCCGCA GGTGAGAGAG CTCATATCCC TCGCCGGGGG CCGCTACGCC
TATTCAAACT ACAGCCGCGT AGACCTGGAG GTGGTGCTGA AGGAGAAGGA CGTGGACGTC
CTCGTGTGGT CGGGCTATGG CGTGCAGTCC GTCTCCGACA TTTTGAAAAT CGAGCCGAGG
CTCTCCGAGC TAAAGGCCGT CGCAGTGGGC AGATTATACG CCTACAGCGA CGCCTTCTAC
CAACTCGCCA ACGCATACCC CGACCAAGTG CTCGAAGAGC TACTCTGGAT AATACACCCC
GAGCTGGCCC CGCCGGGCAA CTTCACCCTC TTTGTGCCAC TGAGGTGA
|
|---|
| Protein sequence | MSQKITLGLA AAALLISILA VALAWSTSAK VEEALHATGQ ELGALTSAVK SLNSTLASLA
SGVEQRLANV EREAAAAKNA TAILLKAAQA PAGEVPVKYA KLFSIRYEGG YYVLRDALGR
TILLAPRGAG PALTKFYVDK YKPAAVVYYP VQRAVYMSST HVAMAYRLYK EGGDAHVLKS
VVGIMWGKEY AWHLPEVAKA LENGTIRDVG PASSPNYEQI AALKPDVVFV YFYPGPYGTE
AVIQRLDQLK IPYAVVNEFQ EGSPLGRAEW IKFIAAFYNL TDAAVKIFDG AEAKWNSLAA
LAREAEHRPR VAWFIIFGGV LYPAGPQVRE LISLAGGRYA YSNYSRVDLE VVLKEKDVDV
LVWSGYGVQS VSDILKIEPR LSELKAVAVG RLYAYSDAFY QLANAYPDQV LEELLWIIHP
ELAPPGNFTL FVPLR
|
|---|
| |