Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3147 |
Symbol | |
ID | 4174924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3791167 |
End bp | 3791808 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638056178 |
Product | pyridoxamine 5'-phosphate oxidase |
Protein accession | YP_662707 |
Protein GI | 109899452 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0259] Pyridoxamine-phosphate oxidase |
TIGRFAM ID | [TIGR00558] pyridoxamine-phosphate oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0321619 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACCTT TAAGTCAAAT AAGACGGGAA TATAGCCAAG GGCATCTCAC TGAAGCGTCA TTGCTGGCAG ATCCCTACGC ACAGTTTGAT AAGTGGATGG CGGACGCAGT CGAGGCCGGC TTACCTGATC CAACTGCCAT GACGGTAGCA ACGGTTAATA GTCAGGGCCA GCCGTCACAA CGTATCGTTT TATTGAAAGA TGTTATGGAC GGTTGCTTTG TCTTTTACAC TAATTTGGGG AGTCGCAAAG CACAAGACCT ACTCACTAAT AGCAAAATCT CCCTGCACTT TCCTTGGCAT ATTTTAGAGC GCCAAGTGTT AGTTAGAGGA AGCGCTTCGC TATTACCTCG CCAAGATGTA CAACACTATT TCTCGTCTCG CCCACTATCG AGTCAGCTTG CTGCTTGGAC ATCCAAACAA AGCCAACCAA TTGAAAGCCG CGATGCATTA CTTTCTCGCT TTGAAGACAC CAAAATAAAG TTCTCTGACA AGGACATTCC TGCTCCAGAA TTCTGGGGAG GCTTTAAAAT CATACCTCAA GAGATTGAGT TCTGGCAGGG TGGGGAGCAT AGATTGCACG ATCGCTTCTT GTTTAGCAGA GAAAACAGCT CGAATTGGTC AATCCAACGT TTGATGCCCT AA
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Protein sequence | MQPLSQIRRE YSQGHLTEAS LLADPYAQFD KWMADAVEAG LPDPTAMTVA TVNSQGQPSQ RIVLLKDVMD GCFVFYTNLG SRKAQDLLTN SKISLHFPWH ILERQVLVRG SASLLPRQDV QHYFSSRPLS SQLAAWTSKQ SQPIESRDAL LSRFEDTKIK FSDKDIPAPE FWGGFKIIPQ EIEFWQGGEH RLHDRFLFSR ENSSNWSIQR LMP
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