Gene Patl_3147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3147 
Symbol 
ID4174924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3791167 
End bp3791808 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content46% 
IMG OID638056178 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_662707 
Protein GI109899452 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0321619 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACCTT TAAGTCAAAT AAGACGGGAA TATAGCCAAG GGCATCTCAC TGAAGCGTCA 
TTGCTGGCAG ATCCCTACGC ACAGTTTGAT AAGTGGATGG CGGACGCAGT CGAGGCCGGC
TTACCTGATC CAACTGCCAT GACGGTAGCA ACGGTTAATA GTCAGGGCCA GCCGTCACAA
CGTATCGTTT TATTGAAAGA TGTTATGGAC GGTTGCTTTG TCTTTTACAC TAATTTGGGG
AGTCGCAAAG CACAAGACCT ACTCACTAAT AGCAAAATCT CCCTGCACTT TCCTTGGCAT
ATTTTAGAGC GCCAAGTGTT AGTTAGAGGA AGCGCTTCGC TATTACCTCG CCAAGATGTA
CAACACTATT TCTCGTCTCG CCCACTATCG AGTCAGCTTG CTGCTTGGAC ATCCAAACAA
AGCCAACCAA TTGAAAGCCG CGATGCATTA CTTTCTCGCT TTGAAGACAC CAAAATAAAG
TTCTCTGACA AGGACATTCC TGCTCCAGAA TTCTGGGGAG GCTTTAAAAT CATACCTCAA
GAGATTGAGT TCTGGCAGGG TGGGGAGCAT AGATTGCACG ATCGCTTCTT GTTTAGCAGA
GAAAACAGCT CGAATTGGTC AATCCAACGT TTGATGCCCT AA
 
Protein sequence
MQPLSQIRRE YSQGHLTEAS LLADPYAQFD KWMADAVEAG LPDPTAMTVA TVNSQGQPSQ 
RIVLLKDVMD GCFVFYTNLG SRKAQDLLTN SKISLHFPWH ILERQVLVRG SASLLPRQDV
QHYFSSRPLS SQLAAWTSKQ SQPIESRDAL LSRFEDTKIK FSDKDIPAPE FWGGFKIIPQ
EIEFWQGGEH RLHDRFLFSR ENSSNWSIQR LMP