| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2173 |
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| Symbol | |
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| ID | 4172325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2624151 |
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| End bp | 2625809 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055181 |
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| Product | hypothetical protein |
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| Protein accession | YP_661745 |
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| Protein GI | 109898490 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1315] Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.819375 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGGAA TAACCCTAAC GGTTGATGAA ACAAATACGC ACCTTAGTGC GCACATTAAC
CCACAAGAGT TGGACGGTAA AATTGATTTT AAAAGCGTGT TGCAGGTTAT AAAGAAAAGC
GAGTACGCCG AGTTTTATCT GAATGATGAT GCTATCCAAA CGTTATTAGC CGATACACAA
ACAGCAATTA AAACAGAAGC CAGCGGAACG CTCGTGGAGC GCGTAGGCGA ACGGCAAGAT
AACGAGATTA GATGTAAGGT TGAAGAAGGC CAATTAAGCG CTAGTATGAC GATCACAAAA
GGCTACGGTG CACCTCTTTT AACCCTAACT GACTTAGTCG CACTTGCAAA CAAAAGTAAT
ATCGTACGCG GGTTGAGCAC TAAACGTCTG AAGGCATTGC ATCAATCTTA TCTATCCTCA
GCCTCGGGAG AATCTGTCAG TGCGACAATC GCCAAAGGTT TGCCGCCTAA AACAGGCCGT
TCATCAAAGC TAAAACCGCT AGTACAAAAT GCATTAGATC GCATATTGCG TCCTCAATCA
TCTCATCACG GTCGTGTTGA TATGCGCAAT TTAGGCGACA TTATATGTGT AAAAGTCGGC
ACCGAATTAT TGCGCAGAAT GCCTCCCTCT GATGGTCGTT CAGGTTATAC CGTTACGGGT
GAAACTATCC GCCCTAAAGC GGGGGAATGG ATAACATTCA GGCCAGGTGA TGGCACCATG
ATAAGCGATA AGGACGAGAA TCTACTTATC GCAGAAATTT CAGGCATGCC TAAATTTAAA
GATCAAAAGA TGTGGGTAGA CGATACCTAT ATCTGTAAAG GCGTTAACGT CGGTACAGGC
AATGTCAACT ATGACGGTGC GGTTTTGGTC AATGGCGATA TCACAGAAAA AATGGAAATT
ATTGCAACCG GCGATGTAAC CGTTAACGGT TTTGTTGAGT CTGCCACTAT TCGTGCTGGT
GGCGATATCA TAATTACCGA AGGCGCAATG GGCAAAGTGA ATGATGCTGG AACCGAGTAC
AGTACCACGT TGCGCGCAAA AGGCAGTATT CATATTCAAC ATGGTCAAGG GCTGGATATA
AAATGTGACG GTGGTGTAAC CATTGGTCGT CAATTAGCGT TTAGTAAAGT CGTATGTCGA
CAGGAAATGT TTGTTGGTCC GATTGATAAA CCTAATGGAA ATTTATTTGC GTGTTCTATC
TTCAGTCAAA ACCGAGTTCA AGCAGGTACG TTTGGCGCTG TTTCTGGTAG TAATCTAACG
TTAGATTTCA GCGATGGGTT TAATTCACTT CTAGCGCGTA AAGACTCGCT GGACGAATTG
GTTAGGCAAA TTCGCCAAAA CTGTAGTCGT CACGAAGATC GCATGAAGCT TATCCACAGC
AAATTTATTC CTGATGACCT GAGGGACAAA GTCAGTGCAG CTCAAGAACT ATTCGAAAAC
GAACACCAGT TAATGCAATG GCTTGAACGT AAGGCAGTTG AGCTTGCAGC AAATAAAGAC
GACTACCAGC AACGGATCAT GGTATCGGCA AATAAACGTA TTTACCCAGG TGTTGTCGTT
AAGCTAAACA ACCGTACTTG GCGAGCAGAC AGAGAGTATG GAAAAGCGAA TGTAAGTTTT
CATGGCCACC AGTGGCATTG TGAAGCGGTC ACTACTTAA
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| Protein sequence | MDGITLTVDE TNTHLSAHIN PQELDGKIDF KSVLQVIKKS EYAEFYLNDD AIQTLLADTQ
TAIKTEASGT LVERVGERQD NEIRCKVEEG QLSASMTITK GYGAPLLTLT DLVALANKSN
IVRGLSTKRL KALHQSYLSS ASGESVSATI AKGLPPKTGR SSKLKPLVQN ALDRILRPQS
SHHGRVDMRN LGDIICVKVG TELLRRMPPS DGRSGYTVTG ETIRPKAGEW ITFRPGDGTM
ISDKDENLLI AEISGMPKFK DQKMWVDDTY ICKGVNVGTG NVNYDGAVLV NGDITEKMEI
IATGDVTVNG FVESATIRAG GDIIITEGAM GKVNDAGTEY STTLRAKGSI HIQHGQGLDI
KCDGGVTIGR QLAFSKVVCR QEMFVGPIDK PNGNLFACSI FSQNRVQAGT FGAVSGSNLT
LDFSDGFNSL LARKDSLDEL VRQIRQNCSR HEDRMKLIHS KFIPDDLRDK VSAAQELFEN
EHQLMQWLER KAVELAANKD DYQQRIMVSA NKRIYPGVVV KLNNRTWRAD REYGKANVSF
HGHQWHCEAV TT
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