Gene Patl_2019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2019 
Symbol 
ID4173893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2458967 
End bp2459800 
Gene Length834 bp 
Protein Length277 aa 
Translation table11 
GC content38% 
IMG OID638055027 
Productmetal dependent phosphohydrolase 
Protein accessionYP_661591 
Protein GI109898336 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.757502 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGTACG ATACAAGTCT TAAGGTAGCG TTAAAAAATA TCAGCAACTG GATAGCAACT 
AAATCTCTTT ATTACAGTCC AGAGCGCAAG AAATATTTAT ACGGATTCTA TGCTGGCCTA
GGGAATTTTG ACGTATATGA GTTACCAGAC GAATATCAAT GCTTAATTTC AAATAGCAAT
CTTAAAGGTA GTGAGCTACA TGCTGTTGTT TTATCGACAC TCCCTATTGA GCATACAACT
ACAGATGAGA TGAAAGCCTA TGAGACTTCA ATTCGCTGTG TATTCAGCGC TAAATTATAC
GGATATAAGC ACTCCTGGTC TCTACAATCT GCGATTAAAT TTGCCTCACT ACATCATGCG
AACCAAAAAC GTAAGAGTAC CGGCGAGCCA TATGTAAACC ACTTGATTGA AGTGGTGCAA
CTCATCCAGC GTTATGAATC AAGTAGCGAT GAAAATACTA TGATAGCCGC AGCTTTGCAT
GACATTTTAG AAGACACTGA GGTTACTAGT ATTGGTCTAA AATACCTATT TGGGAGCGAA
GTTTCAAAAA TAGTACAAGA GCTGACGTGC AACTCAGCGA ACAATTCTGA TAATAAAAAA
ATAGCGTTAT TAAATCAGAT TGCCATAGGG AGTAAAGCAG CGCAATCAAT CAAATTAGCT
GACGTAATAT CTAACGTATC TTCTATCCCT AGCCAGTGGT CGCTTGAACG GAAGTTAGCT
TATATAGACT GGTGTAAAAA AGTAGCAAAG GTATGCTCAT CTTCATCTAA ACGACTATAT
GATCAATTTA ATTTAAAAGT ACAATTAGTA GAAACTGCGG TAAACGACGA ATAA
 
Protein sequence
MGYDTSLKVA LKNISNWIAT KSLYYSPERK KYLYGFYAGL GNFDVYELPD EYQCLISNSN 
LKGSELHAVV LSTLPIEHTT TDEMKAYETS IRCVFSAKLY GYKHSWSLQS AIKFASLHHA
NQKRKSTGEP YVNHLIEVVQ LIQRYESSSD ENTMIAAALH DILEDTEVTS IGLKYLFGSE
VSKIVQELTC NSANNSDNKK IALLNQIAIG SKAAQSIKLA DVISNVSSIP SQWSLERKLA
YIDWCKKVAK VCSSSSKRLY DQFNLKVQLV ETAVNDE