Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1574 |
Symbol | |
ID | 4172566 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1881722 |
End bp | 1882471 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638054583 |
Product | triosephosphate isomerase |
Protein accession | YP_661150 |
Protein GI | 109897895 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0149] Triosephosphate isomerase |
TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0183532 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAATGA ATAACCGTCG ACCTATAGTC GCAGGTAATT GGAAAATGAA TGGCAACCTT GCGTTAATTA AGCAAGTTGA AGACGCATTT TCCAAGGCTG ATGTATCTCA TGTAGATGTT GTGGTGTGCC CACCGTTTCC TTATTTAGGT GGATTCAACG ACAGTAATTT TGCCTTAGGT GGCCAAAATA TCAGTCAATA TGAATCTGGT GCGCATACTG GCGAAACTGC CGTAAGTATG TTGAAAGAAA TGAAGTGCCA ATATGTCATA TTGGGGCATT CAGAGCGACG TGCTGATAAC AACGAGTCAA ATGAATTGGT TGCCGACAAA GTTGAGCTGG CTTTAACCCA TAAGCTCATC CCTTTATTTT GTGTTGGCGA ACCAGAAGAT GTGCGTGAAA GCGGACAACT ATTCGATTTT ATCGCGGCAC AAATTGACGC GGTAATAAAT AAAGTGGGTA TTGCAGCGTT TAACGATATT GTTATTGCCT ACGAGCCTAT TTGGGCGATT GGAACTGGCA AAACTGCGAG TCCCGAACAA GCACAAGAAG TGCATGCATT TATACGTCAA CATTTGGCAA AGCAAGATAG CGAAATTGCT AACCAATGCG TGATTTTATA CGGTGGAAGC GTCAAAGGCA GTAATGCTGT TGAATTGTTT TCACAACCCG ATGTTGATGG CGGTTTGATT GGCGGAGCCA GTTTAAATCC AGAAGATTTT TTAAGCATTT GCTTAGCGGC AAAGCGATAG
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Protein sequence | MQMNNRRPIV AGNWKMNGNL ALIKQVEDAF SKADVSHVDV VVCPPFPYLG GFNDSNFALG GQNISQYESG AHTGETAVSM LKEMKCQYVI LGHSERRADN NESNELVADK VELALTHKLI PLFCVGEPED VRESGQLFDF IAAQIDAVIN KVGIAAFNDI VIAYEPIWAI GTGKTASPEQ AQEVHAFIRQ HLAKQDSEIA NQCVILYGGS VKGSNAVELF SQPDVDGGLI GGASLNPEDF LSICLAAKR
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