| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1003 |
|---|
| Symbol | rpsH |
|---|
| ID | 4173505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1193683 |
|---|
| End bp | 1194075 |
|---|
| Gene Length | 393 bp |
|---|
| Protein Length | 130 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638054004 |
|---|
| Product | 30S ribosomal protein S8 |
|---|
| Protein accession | YP_660583 |
|---|
| Protein GI | 109897328 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0096] Ribosomal protein S8 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000656681 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATGC AAGATCCTAT CGCGGACATG TTTACACGTG TTCGTAACGG TCAGATGGCT
AGCAAAGTTT CTGTATCAAT GCCTTCATCT AAGCTACGTG TTGCAATTGC AGCCGTACTT
AAAGAAGAAG GTTATGTTTC AGACTTCGCA GTTTCTGGTG ACGTTAAACC TGTTTTAGAA
GTGACGCTTA AGTACTTCGA AGGCAAGAAA GTAATTGAAA GCATTGAGCG CGTAAGTCGC
CCTGGTCTTC GCATCTATAA GAAAAAAGAT GAGTTGCCAA AAGTATTGGG TGGTTTAGGT
GTTGCTATCG TTTCTACCTC TAAAGGTGTG ATGACTGACC GTGCCGCGCG TAAAGCGGGT
ATGGGTGGTG AGATCATCGG CTACGTAGCG TAA
|
|---|
| Protein sequence | MSMQDPIADM FTRVRNGQMA SKVSVSMPSS KLRVAIAAVL KEEGYVSDFA VSGDVKPVLE
VTLKYFEGKK VIESIERVSR PGLRIYKKKD ELPKVLGGLG VAIVSTSKGV MTDRAARKAG
MGGEIIGYVA
|
|---|
| |