| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0821 |
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| Symbol | |
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| ID | 4172318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 957359 |
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| End bp | 960598 |
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| Gene Length | 3240 bp |
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| Protein Length | 1079 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053824 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_660403 |
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| Protein GI | 109897148 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00114768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTTACG CCCGCTATGC CACTTTGTTC GTCATCACCC AGGTATGTTT GCTGTTCTCT
TTTACAGGTA GCGCAAAAAC AGTTCAGGTC AAAAACGACT GGGAGAACCC AGACGTGATA
CAAATCAACA GGTTACCCGC CAGGGCAACC TCCTATTCTT TTGATACGCC AGAACAGGCT
TTGACCCGAG ATCGCAACCA ATCCACCATA CAAAGCTTAA ATGGCCAGTG GAAGTTTCAT
TTTGCTGAAA AAAGTCAAAA TCGCCCCATG AATTTCTTTC GCACGGATTT TGACAGCCAA
TCTTGGTCTA CCATCACCGT CCCTGCCAAC TGGGAGCTAG AGGGCTATGG CACGCCAATT
TATACCAACT CGGTATATCC GATGTTTGAA GATGAAAATG ACATCGTTTT ACCCTTAATC
ACCCGTGACA ATCCTGTAGG CTCCTATTTA ACGGACTTTA GCGTCCCCGA AGACTGGCAG
GATGAGCAGA TTATTTTGCA CTTTGGTGGT GTAACCTCGG CCTATTACGT TTGGGTTAAT
GGACAAAAAG TTGGCTATGC TCAGGGCAGT CGCCTGCCAT CTGAATTCGA TATTACCGAT
TACTTAGTAC CTGGCAATAA CACCTTAGCA GTGCAAGTAT TCCGCTGGAG TGATGGTAGT
TATTTAGAAG ACCAAGATCA CTGGCGATTA AGCGGCATTC ACAGAGAAGT CATGCTGATG
GCTCAGCCTA AAGTCGCTCT GAACGACTTT TTTGTGCAAA CCCATTTAAG CGATAATTAC
CAACAGGGTA TGATTGAAAT CAATCCTAAA CTGTCTAACC CTGAGCGTCA GAAATTAGCA
GGTTGGACAG TCAAAGCTGC ACTGTACGAC GCCATGGGTA AAGAAATCGA CGATACCCGC
ATGCAAGTTA ACGCCACAAA ATTAACCCGC GTGGCCTATC CTCAGCGTGA TAATTTCGCT
TTCGGGTTAA TGAAAACCAA GGTAGATAAA CCAGCACTAT GGACATCAGA AACCCCTAAC
TTGTATACCC TAGTGTTAAG TTTGCACAAC AAACAAGGGG AGCTGGTTGA AACACGCAGC
ACCAGAGTCG GCTTTCGCGA TGTGAAATTT GGCCCCGAAG GAGAGTTGTT GATTAATGGC
CAAAGTGTTG AAATTATTGG GGTAAATCGT CACGACCATG ACGCGAAAAA AGGTAAAGCG
CTGGATCGCG AAGATCTACG TCAAGACGTT ATCATGCTCA AGCAATTTAA TTTTAACTCA
GTACGCACCT CTCACTATCC GAATGATCCG TATTTTTATG AACTTGCGGA TGAGTACGGT
TTGTACATTA TGGATGAAGC AAATATTGAA TCTCATGGTG TGGGCGGCCT GCTTGCGAAC
TTACCCCAGT GGAACTATTC CATGAGTCAA CGTGCCATGC GCATGCTTGA AAGAGATAAA
AATCACCCGT CTATTATTTC ATGGTCTATG GGTAACGAGT CAGGAACTGG CCCTAACTTT
GCCGCGATAG CAGGTTGGTT AAAAGATAAA GATCCTACGC GATTTGTGCA TTATGAAGGC
GCACAAGGTG ATCCAACGCA CCCACAATAC GTCGGTTTAA GCGAACGCTA CCCGACCGAT
GAAGAGAAAA GTCAGTATTA CACCCCTCTT GCTAATCCGA CGGATCCGAA GTTTGTTGAT
GTCATTAGCA GAATGTACCC CACCCTTGAC GAGCTTAAAG GCTTAGCTGA CAGTCCGCAT
ATTGAGCGTC CTATTTTAAT GTGTGAATAC GCCCATGCGA TGGGTAACTC CTTGGGTAAT
CTTGCCGAGT ACTGGGAAAT GGTTCGAGCA CGACCAAACC TCATCGGCGG CTACATCTGG
GACTGGATTG ACCAAGGAAT AGAGACACAG AACGATCAGG GGGAAACCTA CCTTGCCTAT
GGCGGAGATT TTGGTGACAC GCCAAATGCA TCTAACTTTT GTTTAAATGG CGTGATGGAC
TCCTACCGCC AACCTAATCC TCATGCATGG GAAGCAAAAT ATGTTTTCCA GCCAGCGGAA
TTTACCTTAG TGGAACCTGC GAAAGGTAAA GTATCAGTGC TTAATCGCTT TTTCTTCAAC
AACCTAGCTA ACTACGATAT TAGCTGGTCG CTTTCTGAAG ATGGTAAGCG TATTGAACAG
GGCCTTATTC AGCCAGGTGA TGTGGCACCT GGTGCACACA AGAGCCTGGA GATCCCCTAT
CAAAAACCGA GCATTAAGCC AGGTGCAACC TATTGGTTAA AAGTCAGCTT ATTACTTCGT
GACGATACGT TGTGGGCGGC CAAAGGCCAT GAGTTAGCGA AAGCGCAATT TAGTTTGCCT
TTCTCTCGCC CAGCTGAAGA AGCGCCTATC AGCGCAAGGG CATTGCAAGT GGATGACACT
GCAGCGAAGT TAACCATCGC TGCAGACACA GTTAGTGTGA CCTTCAATAA AACAACTGGT
TACTTAGATA GCCTCATTTC TGATGAGCTG AAAATCCTAC ACGAACCACT TAAACATAAC
TTTTGGCGTC CTCAGACCGA CAACGATCGC ATCGGTTGGA AAACCCTCGA AAATAAGAAA
GTATGGTTTG AGGCGACGCA GCATTTAGCA CTTGGCAGCT TTGATTACCG CCAAACTGAT
ACAGGCGTAA TAGTAAACAC CCGCCATACT AACGGCGCTT CTGTGAAAGT AGATACCCAA
TATCACATTG ATGCAGCGGG TAATGTCACC GTGCAAGTCG CACTTGATGC CGATAAAGAC
TTGCCTGATT TGTTGCGAGT AGGTATGTCT ACAGCGGTCA GCGGCACGCT CGAGCGCATG
GCGTACTATG GTAAAGGCCC TCACGAAAAT TATATCGATC GTAATCAAGG CGCCGAAACT
GACGTATACC AAGGGGTAGT TTCAGACTTT GTACACAGCT ACGCCCGCCC TCAAGAAAAT
GGAAACCGTA CTGGAGTGAA GTGGTTAACC TTAAGCGATT ATGCTCAGCA TTCCTTCACC
GTAAAAGGCA AACAAGACCT CAGTATATCA GTATGGCCTT GGTCAGCTGA GAACTTACAA
GAAGCAAACC ATCCATATGA CTTGGTGGAA CGGGGAATAT TTACCGTCAA CATCGACCTT
ATCCAAGCTG GAGTAGGTGG AATTGACTCA TGGAGCCCTA ATGCGGCACC AATCAAAAAG
TATCAGTTGC CATCAGGTCA GTATCAATAC CAATTCACCC TAGCTGTAGG TAAGCATTAA
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| Protein sequence | MLYARYATLF VITQVCLLFS FTGSAKTVQV KNDWENPDVI QINRLPARAT SYSFDTPEQA
LTRDRNQSTI QSLNGQWKFH FAEKSQNRPM NFFRTDFDSQ SWSTITVPAN WELEGYGTPI
YTNSVYPMFE DENDIVLPLI TRDNPVGSYL TDFSVPEDWQ DEQIILHFGG VTSAYYVWVN
GQKVGYAQGS RLPSEFDITD YLVPGNNTLA VQVFRWSDGS YLEDQDHWRL SGIHREVMLM
AQPKVALNDF FVQTHLSDNY QQGMIEINPK LSNPERQKLA GWTVKAALYD AMGKEIDDTR
MQVNATKLTR VAYPQRDNFA FGLMKTKVDK PALWTSETPN LYTLVLSLHN KQGELVETRS
TRVGFRDVKF GPEGELLING QSVEIIGVNR HDHDAKKGKA LDREDLRQDV IMLKQFNFNS
VRTSHYPNDP YFYELADEYG LYIMDEANIE SHGVGGLLAN LPQWNYSMSQ RAMRMLERDK
NHPSIISWSM GNESGTGPNF AAIAGWLKDK DPTRFVHYEG AQGDPTHPQY VGLSERYPTD
EEKSQYYTPL ANPTDPKFVD VISRMYPTLD ELKGLADSPH IERPILMCEY AHAMGNSLGN
LAEYWEMVRA RPNLIGGYIW DWIDQGIETQ NDQGETYLAY GGDFGDTPNA SNFCLNGVMD
SYRQPNPHAW EAKYVFQPAE FTLVEPAKGK VSVLNRFFFN NLANYDISWS LSEDGKRIEQ
GLIQPGDVAP GAHKSLEIPY QKPSIKPGAT YWLKVSLLLR DDTLWAAKGH ELAKAQFSLP
FSRPAEEAPI SARALQVDDT AAKLTIAADT VSVTFNKTTG YLDSLISDEL KILHEPLKHN
FWRPQTDNDR IGWKTLENKK VWFEATQHLA LGSFDYRQTD TGVIVNTRHT NGASVKVDTQ
YHIDAAGNVT VQVALDADKD LPDLLRVGMS TAVSGTLERM AYYGKGPHEN YIDRNQGAET
DVYQGVVSDF VHSYARPQEN GNRTGVKWLT LSDYAQHSFT VKGKQDLSIS VWPWSAENLQ
EANHPYDLVE RGIFTVNIDL IQAGVGGIDS WSPNAAPIKK YQLPSGQYQY QFTLAVGKH
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