Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0568 |
Symbol | |
ID | 4174015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 655778 |
End bp | 657271 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638053570 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_660151 |
Protein GI | 109896896 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.380077 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACCCT CTTTACAATT AAAATTTAGT CAATCACTCA CTATGACGCC ACAGTTACAG CAAGCTATTC GTTTGTTGCA ATTGTCTACG TTAGATTTAC AGCAAGAAAT TCAAGAAGCC TTGGATTCCA ACCCGCTGTT GGAAGTTGAA GAGCCTACGG ATCAGGAATC CGGCGATAGT GCGTTAAATG ACAATTCCCT CGACCCGTCT TCTAAAGATA CCAATGAAAT AGTTGATACC AGCAGTGACA ACTTAGACTC AAGTGAAGCG TTCGAGAAAA ACGAAATCCC AGAAGACTTA CCTACGGATA CCACTTGGGA TGAGTACATC AGCGCTTCTT CCGCACCTGC CTCTAGCATA TCCAGTGGTG CCGGCGGTGA TGACGAACAG ATCTTTCAAG GCGAAACCAC AGATAACATT CAAGATCATT TGCTGTGGCA AATGCGTTTA ACCCATTTTA GTGATACCGA TGTCGCGATT GCGACAGCGA TCATTGATTC TATCGATGAG TCTGGTTATT TGACCATGAG CGCTGAAGAC GTTCTGGCCA GCATGGATGA TGAAGAAATA GAGCTCGATG AAGTGGAATG CGTACTTAAG CGTATTCAAA TGTTCGACCC AATTGGGTCA GGCTCTCGTA CACCACAAGA ATGCTTGCTA GTGCAATTGC GTCAGTTTGC TCCTGATACA CCCTGGTTAG AAGAAGCGAA GACCTTGATT GGGGACTATG CCGACCTTTT GGCAAGCAAG GATTACCGTA CTTTGATGCG TAAATCTCGC CTTAAAGAGG ATGATTTGCG TGAGGTCATG CGTTTACTTA AAACGCTCAA TCCGCGTCCA GGCAGCGCCT TGATCAAAGG TGAAGCAGAA TACGTTATAC CTGATGTGTC AGTGAGTAAG AAAAATGGCC GTTGGACAGT AGAGCTTAAC CCAGACAGCC TACCCAAATT GAACGTTAAT CAACAGTATG CTGCAATGAG TCGTAGCGCG AAAAACACCA GTGATAGTCA ATTTATTCGC TCACACATGC AAGAAGCCAA ATGGTTTATT AAAAGTGTTG AGAGCCGAAA CGATACCTTA TTGAAAGTGT CAAACTGTAT AGTACAGCAG CAAATGGGCT TCTTTGAACA TGGGCCTGAG ATGATGAAGC CTATGGTACT AAATGACGTA GCCGAAATGG TGGATATGCA TGAATCTACA ATTTCTCGTG TTACTACCCA AAAATATATG CATACCCCTA GAGGTATATT TGAGCTGAAA TATTTCTTCT CGAGCCATGT TGCAACTGAG ACAGGCGGAG AGTGCTCGTC AACGGCGATA CGCGCATTGA TTAAAAAGCT GGTCGCAGCT GAAAAACCAA GCAAGCCGTT AAGTGACAGC AAGATTGCTC AATTGTTGGC CGATCAAGGC ATCATGGTCG CTCGGCGAAC AATAGCAAAG TACCGGGAAT CTCTGATGAT ACCCCCGTCG AACCAACGAA AAAGCCTATT GTAG
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Protein sequence | MKPSLQLKFS QSLTMTPQLQ QAIRLLQLST LDLQQEIQEA LDSNPLLEVE EPTDQESGDS ALNDNSLDPS SKDTNEIVDT SSDNLDSSEA FEKNEIPEDL PTDTTWDEYI SASSAPASSI SSGAGGDDEQ IFQGETTDNI QDHLLWQMRL THFSDTDVAI ATAIIDSIDE SGYLTMSAED VLASMDDEEI ELDEVECVLK RIQMFDPIGS GSRTPQECLL VQLRQFAPDT PWLEEAKTLI GDYADLLASK DYRTLMRKSR LKEDDLREVM RLLKTLNPRP GSALIKGEAE YVIPDVSVSK KNGRWTVELN PDSLPKLNVN QQYAAMSRSA KNTSDSQFIR SHMQEAKWFI KSVESRNDTL LKVSNCIVQQ QMGFFEHGPE MMKPMVLNDV AEMVDMHEST ISRVTTQKYM HTPRGIFELK YFFSSHVATE TGGECSSTAI RALIKKLVAA EKPSKPLSDS KIAQLLADQG IMVARRTIAK YRESLMIPPS NQRKSLL
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