| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_0668 |
|---|
| Symbol | |
|---|
| ID | 6460488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011059 |
|---|
| Strand | + |
|---|
| Start bp | 705853 |
|---|
| End bp | 708240 |
|---|
| Gene Length | 2388 bp |
|---|
| Protein Length | 795 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642724660 |
|---|
| Product | ribonuclease R |
|---|
| Protein accession | YP_002015363 |
|---|
| Protein GI | 194333503 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000570881 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0119217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGAAGAA AAGTTTCTCA TCAGAAGACG ACAAAGAGTC TGAAACGAAA GAAAAAACAG
GGTGGGTCTC AGCCGCCTCG CGAAAAACGC GTGAAGCCAA ATGATCATAT TCTGATCAAT
GAGTTTCTTG TCCGCAAAGG CGAAAGCTCA CTGACATCGG AAATAATCAG TTATTTATCC
GATCATGAGG GCGAGCGTTT CAGGTCCGTC GACCTGGCCA AACAAATGGG GTATGAAGAG
TCGAGGCATC TGCCGGGATT CTGGTATGTG CTCCACAAGC TTCAGGAAGA GGGTGTCATT
GACAAGGATT CCAAACGAAG CTATGGTCTT GCCGGGGAAG AATTCCCGAC ATACGAAGAT
GTTCTTGTCC AGACAAAACA GTTTCCCCGC CCCGATAAAA AGCACTACAG TGTCGATACT
ACATACACCG GGACGATTAC AACGCATCCG AACGGGTATG GTTTCGTCAA GGTCGAGGGA
TTTGATGATG ACATTTTCAT CAATGCCAAC TCACTGAGCG ACGCGATACA CGGTGACGAT
GTCGAGGTGC TGGTGACAAA GGTTCCTCAG ACCTATCAGA CCCAGCAGAG TCCTCATCAG
CGCTGCGAGG GGTTGATTGT CAAGGTTGTT TCCCGCAAGC TTCGTTCCGT GGTCGGTACG
CTGAAGCGAA CAAACAGAAA ATTTGTTTTG CTGCCGGATC TTAAGAAGAT ACTTCCCGAG
ATATCCATTC GCATTAAGGA CTCCGCCGGT GCTCTTGACG GGCAGAAGGT GATGGCGGGA
AATCTCGAGT TTCTTAAAAA CGGTTCGATC AGGGCAGTTG TTGTCGAGGT GCTTGGTGAT
GCTGGTTCTT CAGCGGTTGA AGTTAGTGCG ATTGCGCGGG GACTCGGTAT CGATGAGACG
TTCGATGATC CTTTGCTCAA AGAGGTCGCT TCGATCAGTG ATTCCTACAC CGAGGAGGAT
TTCAGGGACC GTCTCGATAT TCGTGATAAA GTTGTCTTTA CCATTGACCC TGTTGATGCG
AAGGATTTCG ATGATGCGCT TTCTCTTGAA CCGCTTCCGA AAGGTCATTT CCGGATCGGG
GTCCATATTG CCGATGTCTC TCACTATGTC AAAGAGGGAA ACCTGCTTGA TATCGAGGCC
CAGAAGCGAT CAACGTCGGT CTACCTTGTC GACAGGGTTA TTCCAATGCT GCCCTCAAAG
CTTTCTGAAG AGATCTGCAG TCTTAATCCA AAGGTTGACA GGCTGGCATT TTCCATCTTT
TTCAAAATGA GCCCTCAGGG CGAAGTGCTT CAGCATGAGT TTCAGAAAAC GGTGATCAAT
TCAAAACGGC GCTTTACCTA TGAAGAGGTC GATGCCATTT TAAACGCCGG TAAAGGGGAA
TATCATGATG AACTCAAAAA TCTCGATCAG ATAAGCAGAA TATTGCGCGA GAAGCGACTT
GACGAAGGCG GTCTTGAATT TGAAACCCAG GAGGTTCGCT TTAAACTCGG AAGTAAGGGT
GAGCCTGTAG AAGTTATTAA AAAAGAACGT CTTGCCAGTC ACAGACTGAT CGAAGAGTTT
ATGCTTCTGG CCAACAGAAA GGTTGCTGAA TATATCAGTA CCCGGTTTGC AGAAAAGGGC
AAAATGGCCT ATCCGTCTAT TTACAGGGAG CATGGCTCTC CACAGGAGGA AAAGGTTGCT
ATCCTTGCCA ATTTCGTAAA AAAAATCGGC TATACTCTTC AGTTGACAGG CAAGGGAAAA
AATGGCGCTC CTGTGGTGAA AGCCAAAGCG CTTCGCGATC TGCTCAAGCA GGTACATGGT
ACCAACGTTG AGTTTCTGGT GAATGAACTT GTTCTGCGCT CGATGGCCAA GGCACAGTAT
ACCGGTACGA GCGATGGGCA TTTCGGGCTG GGTTTTGAGC ATTACACGCA TTTTACCTCT
CCTATCAGGC GTTATCCTGA TCTGGTCGTG CACCGTCTGT TGTTTGAATA CGAATCGTTG
CGCAAAAGCC GCAAAAAAGA ACCTTTAAGG CGGTTGAAGG AAATTGAGAG CAAGATTGTC
GAAATATGTA AAATTGCCAA TGAGCGCGAG AAGAGCGCTG TTGAGGCTGA GCGTGAGTCT
ATCAAGCTGA AGCAGGTAGA GTTTATGTCT GCTCATATAG GCAACGCCTA CCAGGGGATT
ATCTCCGGGG CGACAGAGTA CGGGATCTAT GTTCGTATAG AAGATCTTGC TATTGAGGGA
CTGGTGCACA TGAAAAACCT TACCGACGAC TATTACGAGT TTGATGCGTC AAGCTACTCG
CTGGTAGGAA AGAGGCGTAA ACGTCGTTTT CAGATCGGTC AGCGTATCAA GATTAAAATT
TTCAAGGTTG ATATGCAGCG CAGGACCATT GATCTTGTTC TTGAATAG
|
|---|
| Protein sequence | MGRKVSHQKT TKSLKRKKKQ GGSQPPREKR VKPNDHILIN EFLVRKGESS LTSEIISYLS
DHEGERFRSV DLAKQMGYEE SRHLPGFWYV LHKLQEEGVI DKDSKRSYGL AGEEFPTYED
VLVQTKQFPR PDKKHYSVDT TYTGTITTHP NGYGFVKVEG FDDDIFINAN SLSDAIHGDD
VEVLVTKVPQ TYQTQQSPHQ RCEGLIVKVV SRKLRSVVGT LKRTNRKFVL LPDLKKILPE
ISIRIKDSAG ALDGQKVMAG NLEFLKNGSI RAVVVEVLGD AGSSAVEVSA IARGLGIDET
FDDPLLKEVA SISDSYTEED FRDRLDIRDK VVFTIDPVDA KDFDDALSLE PLPKGHFRIG
VHIADVSHYV KEGNLLDIEA QKRSTSVYLV DRVIPMLPSK LSEEICSLNP KVDRLAFSIF
FKMSPQGEVL QHEFQKTVIN SKRRFTYEEV DAILNAGKGE YHDELKNLDQ ISRILREKRL
DEGGLEFETQ EVRFKLGSKG EPVEVIKKER LASHRLIEEF MLLANRKVAE YISTRFAEKG
KMAYPSIYRE HGSPQEEKVA ILANFVKKIG YTLQLTGKGK NGAPVVKAKA LRDLLKQVHG
TNVEFLVNEL VLRSMAKAQY TGTSDGHFGL GFEHYTHFTS PIRRYPDLVV HRLLFEYESL
RKSRKKEPLR RLKEIESKIV EICKIANERE KSAVEAERES IKLKQVEFMS AHIGNAYQGI
ISGATEYGIY VRIEDLAIEG LVHMKNLTDD YYEFDASSYS LVGKRRKRRF QIGQRIKIKI
FKVDMQRRTI DLVLE
|
|---|
| |