Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4825 |
Symbol | |
ID | 1186508 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5463084 |
End bp | 5464979 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637396145 |
Product | penicillin-binding protein |
Protein accession | NP_794559 |
Protein GI | 28871940 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
TIGRFAM ID | [TIGR03423] penicillin-binding protein 2 |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.436079 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTCAAC CGATCCGCCT AAAAGACCAC GAAAAAGACG CACGTCTGGT GCGCGGCAGG GTCGTGTTCG GTGCTGTGGC GGTCGTGTTG CTGGTGTGCG TACTGATTGC CCGTCTGTAT TACCTGCAGG TCATCCAGTA CGACTATCAC TCCACGCTGT CGGAAAACAA TCGTGTTCAC GTTCAGCCCA TTCCGCCCAG CCGTGGCCTG ATCTACGACC GCAACGGCGT TGTGGTGGCG GATAACCGGC CCAGTTTCAG CCTCAGCATG ACCCGCGAGC GTTCCGGCGA ATGGTCCAGC GTGCTCGACA CCATCGTCGA GATCCTGCAG CTCACCCCTG ACGACCGGAT CATTTTCGAA AAACGCATGA AGCAGGGGCG TCGGCCTTTC GAGCCGGTGC CGATCCTGTT CGAGTTGAGC GAAGAGCAAA TCGCCCTGAT CGCCGTCAAC CAGTTCCGCC TGCCGGGCGT CGAAGTGGTG GCGCAACTGG TACGCCACTA CCCGCAAGGG CCGCATTTTG CGCACTCGGT GGGCTACATG GGGCGGATCA ACGAAAAAGA GCTCAAGAGC CTCGACCCGA TCAATTACAG CGGTACGCAC CATATCGGCA AGACCGGTAT CGAACGCTTC TACGAAGCCG AACTGCATGG TCAGGTCGGC TACGAAGAGG TCGAAACCAA CGCTCGTGGC CGCGTGCTGC GCGTGCTTAA ACGCACTGAC CCGATCCCCG GCAAGGACAT CGTCCTGAGC CTGGACATCA ATCTTCAGGA AGCCGCCGAA GCGGCGCTGG GCGGGCGTCG TGGTGCGGTG GTTGCGCTGG ACCCTTCTAC CGGTGAAGTG CTGGCGATGG TCAGTGCGCC CAGCTTTGAT CCGAACCTGT TCGTGACCGG TATCAGCTTC AAGGCCTACG CAGAGCTGCG CGATTCCATC GACCGGCCAC TGTTCAACCG CATTCTGCGC GGCCTTTACC CACCCGGTTC GACCATCAAG CCTGCCGTGG CGATTGCAGG GCTGGACTCC GGCGCTGTGA CGCCTGGCTC GAGGGTCTTC GATCCTGGGT ATTACCAACT GCCCAATTAC GATCACAAGT ACCGCAACTG GAACCGCACC GGCGACGGCT GGGTGGACCT GGATACGGCG ATCATGCGTT CAAATGACAC GTACTTCTAC GATCTGGCAC ACAAAGTGGG CATTGATCGA CTTGCCGCCT ACATGAACAA GTTTGGTATC GGGCAGAAGG TGTCGCTGGA CATGTTCGAA GAGTCTCCCG GCCTGATGCC GTCCCGTGAA TGGAAGCGCG CCACGCGCCG TCAGGCCTGG TTCCCGGGCG AAACCCTGAT TCTCGGGATC GGTCAGGGCT ACATGCAGGC AACCCCGTTG CAACTGGCCC AGGCGACCGC GCTGGTGGCC AACAAGGGTG TCTGGAACCG TCCGCATCTG GCCAGGACCA TCGAGGGCAA AGCGCCGGTG GACGAAAACC CGATGCCGAA CATCGTGCTG CGTGATCCGG CCAACTGGGG ACGGGTCAAC CACGGCATGC AGGAAGTGAT GCACGGCGCC CGCGGCACGG CGCGCAAGGC TGCCATCGGT GCGCAATACC GGATTGCCGG CAAGAGCGGT ACGGCGCAGG TCGTTGCGAT CAAGCAAGGC GAGAAATACG ACCGCACCAA GGTGCAGGAA CGTCACCGTG ACCACGCTTT GTTCGTCGGT TTTGCGCCGG CCGACAACCC GAAAATCGTT GTGGCAGTCA TGGTCGAGAA CGGCGAGTCC GGCTCCGGCG TGGCTGCACC TGTAGTTCGT CAGGTCCTGG ACGCCTGGCT GCTCGACGAA AACGGCCATC TCAAGCCTGA GTACGCCGGT TCCCTGAATC TGGAGGCTGC GGCCCGTGAA GAGTAA
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Protein sequence | MSQPIRLKDH EKDARLVRGR VVFGAVAVVL LVCVLIARLY YLQVIQYDYH STLSENNRVH VQPIPPSRGL IYDRNGVVVA DNRPSFSLSM TRERSGEWSS VLDTIVEILQ LTPDDRIIFE KRMKQGRRPF EPVPILFELS EEQIALIAVN QFRLPGVEVV AQLVRHYPQG PHFAHSVGYM GRINEKELKS LDPINYSGTH HIGKTGIERF YEAELHGQVG YEEVETNARG RVLRVLKRTD PIPGKDIVLS LDINLQEAAE AALGGRRGAV VALDPSTGEV LAMVSAPSFD PNLFVTGISF KAYAELRDSI DRPLFNRILR GLYPPGSTIK PAVAIAGLDS GAVTPGSRVF DPGYYQLPNY DHKYRNWNRT GDGWVDLDTA IMRSNDTYFY DLAHKVGIDR LAAYMNKFGI GQKVSLDMFE ESPGLMPSRE WKRATRRQAW FPGETLILGI GQGYMQATPL QLAQATALVA NKGVWNRPHL ARTIEGKAPV DENPMPNIVL RDPANWGRVN HGMQEVMHGA RGTARKAAIG AQYRIAGKSG TAQVVAIKQG EKYDRTKVQE RHRDHALFVG FAPADNPKIV VAVMVENGES GSGVAAPVVR QVLDAWLLDE NGHLKPEYAG SLNLEAAARE E
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