Gene PSPTO_3180 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3180 
Symbol 
ID1184837 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp3571732 
End bp3572355 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content64% 
IMG OID637394535 
Productlipoprotein, putative 
Protein accessionNP_792969 
Protein GI28870350 
COG category[S] Function unknown 
COG ID[COG3009] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.131862 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCTTGC GCCTGAAACT GATGGTACTC GCCGCTGCAC TGGGCATGGG CGCCTGCACC 
TCGACGCAGA CCCACTATTA CACGCTGATC GCACCGATGG GCGCGACCGG CAGCGCAGCA 
GCCAGACCCG CGCCGTTCCA GTTTGAAATG CTCCCGGTGA TCATGCCGGT GCAGGTCGAC 
CAGCCGCCCC TGGTGGTCCG TCAGGGCAAC GGTAGCCTGG CGATTCTGGA CACCGAACGC 
TGGGGATCGC CACTGGGCGA CGAATTTCAC GACGCGCTGA CCCCGCAACT GGAGCGTCGA 
TTCGGTAGCC GCGACATGGC CGGCCTGCCG AAAAACGGCG ACCAGCCTGT GCTTTCGGTT 
CGCACGGACG TACGCCGCTT CGAGTCGATG CCCGGCCATT ACGCCCTCAT CGATGTGGTG 
TGGACACTGG GGCTACGCGA TGCAGGCGCT ACCGCAGGCA GCAAAAGGCA AAGCCTGACC 
TGCAGCAGCG TGATCCGCGA GCAGGCTGCA GAAGGCATGG AAAACCTGAT TCTTGCCCAC 
CAGAAAGCGG TTGCAACCTT GGCTGAAAAG ATCGCAGCCA CGGCGGCAAG CTGGGCGGCA 
CAACCCTCCT CGCGCTGCCT TTGA
 
Protein sequence
MTLRLKLMVL AAALGMGACT STQTHYYTLI APMGATGSAA ARPAPFQFEM LPVIMPVQVD 
QPPLVVRQGN GSLAILDTER WGSPLGDEFH DALTPQLERR FGSRDMAGLP KNGDQPVLSV 
RTDVRRFESM PGHYALIDVV WTLGLRDAGA TAGSKRQSLT CSSVIREQAA EGMENLILAH 
QKAVATLAEK IAATAASWAA QPSSRCL