| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3101 |
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| Symbol | |
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| ID | 1184758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3487584 |
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| End bp | 3488981 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637394459 |
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| Product | outer membrane efflux protein |
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| Protein accession | NP_792893 |
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| Protein GI | 28870274 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00986507 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCGT TTAAAGTCTT TGTCCCGAGC CTGCTGGTTC TGGCGCTGGC GGCCTGCGCC
GTCGGCCCGG ACTACAAGGC ACCGGTCACC GCGCCTGCGA CCCTGGCCTC GGCGGCCAAG
GGCAACTATG ACCGTAGCAA GGTCAACACC CTGTGGTGGC AGCAGTTCGA GGACCCGACC
CTTAACAAGC TGGTGGCCCA GTCACTGGAC GGCAACCGTG ATCTGCGCGT CGCATTTGCC
CGCCTCAAGG CTGCACGGGC GATTCGCGAT GACGTCGCCA ACGACGTCAT GCCGGTGGTG
ACCAGCCGGG CCAGCAGTGA CATCGGCAAA GGCCAGCAGC CCGGTATCAC CGAGCGCCGC
GTCAACAGCG AGCGTTACGA TCTGGGCCTG GACATGGCCT GGGAGCTGGA CCTGTTCGGA
CGCATTCAGC GACAACTGGA AGCCAGCGAT GCCGACCAGG AGGCTGCCGA AGCCAATCTG
TATCAGCTTC AGGTCACGCT GATCGCCGAA GTGGTCGATG CCTACGGGCA ACTGCGCGGC
GCTCAATTGC GTGAAGCCAT CGCCCGGGAC AACCTGACCA ACCAGCAGAA GTCTCAGGGC
ATCACCACTC AACTGCGCGA TGCCGGTGTC GGCAACGAGC TGGACGTCGT ACGCGCCGAC
GCACGCCTTG CAGCGGTTGA AGCAACTGTT CCGCAATTGC AGGCAGAGCA GGCGCGCCAG
CGCAATCGCA TTGCAACATT GCTGGGCGAG CGACCAGACA CCCTCAGCGT GGACCTGAGC
CCGAGCAAAT TGCCCGCGAT TGCCAAGGCC TTGCCTATCG GCGATGCAAC GCAGGTGTTA
CGCAATCGCC CTGACATACG TGCTGCCGAG CGCCAACTGG CTGCCTCGAC TGCGCGTATC
GGCGTGGCGA CGGCCGACCT GTTTCCGCGC GTCAGCCTGA GCGGCTTTCT GGGCTACACC
GCCGGACGTG GCTCGCAGAT AGGTTCTTCT GCGGCCAGAG CCTGGTCGCT GGGGCCGAGC
ATCACCTGGG CAGCCTTCGA TCTGGGCAGT GTGCGGGCGC AGATTCGCAG CGCAGATGCC
GATGCCGAAG GCGCGTTGGC CAACTACGAG CAACAAGTGC TGCTGGCGCT TGAGGAATCG
GAAAACGCGT TCAGCGATTA CGACAAACGC CAGCAGCGAC TGGTGGCACT GATGCGCCAG
AGTGACGCGA GTCGCTCGGC AGCACGACTC GCCTCGGTGC AATACCGTGA AGGCACCGCC
GATTTTCTGG TGTTGCTGGA TGCAGAGCGC GAGCGTCTGG CAGCCGAGGA CTCTCAGGCT
CAGGCAGAAA TCGAGCTGTA TCGCGGCATC GTGGCAATCT ACAAGGCACT GGGCGGTGGC
TGGCAGCCGC AAGCCTGA
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| Protein sequence | MSAFKVFVPS LLVLALAACA VGPDYKAPVT APATLASAAK GNYDRSKVNT LWWQQFEDPT
LNKLVAQSLD GNRDLRVAFA RLKAARAIRD DVANDVMPVV TSRASSDIGK GQQPGITERR
VNSERYDLGL DMAWELDLFG RIQRQLEASD ADQEAAEANL YQLQVTLIAE VVDAYGQLRG
AQLREAIARD NLTNQQKSQG ITTQLRDAGV GNELDVVRAD ARLAAVEATV PQLQAEQARQ
RNRIATLLGE RPDTLSVDLS PSKLPAIAKA LPIGDATQVL RNRPDIRAAE RQLAASTARI
GVATADLFPR VSLSGFLGYT AGRGSQIGSS AARAWSLGPS ITWAAFDLGS VRAQIRSADA
DAEGALANYE QQVLLALEES ENAFSDYDKR QQRLVALMRQ SDASRSAARL ASVQYREGTA
DFLVLLDAER ERLAAEDSQA QAEIELYRGI VAIYKALGGG WQPQA
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