Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2544 |
Symbol | |
ID | 1184196 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2808195 |
End bp | 2809670 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637393915 |
Product | hypothetical protein |
Protein accession | NP_792354 |
Protein GI | 28869735 |
COG category | [S] Function unknown |
COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00544949 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAGCA AAGCTATGCA ACAGGGTACT GTCAGCGAAT TTCAGCACGG AATCCTTGAT CAGATCATCG CAGAAACCAG GCTGAGCCCG GATGATGATG CCTATGAAAT TGCCAAGCGT GGTGTTGCTG CGTTTATCGA AGAACTGCTC AAGCCGCACA ACAGCAACGA GCCAGTAAAA AAGGCCTTGG TCGATCGAAT GATCACGGAA ATTGACGCCA AACTGAGTCA GCAGATGGAT GAGATCATTC ACCATGCAGA ATTTCAGGCA TTGGAGGCGT CCTGGCGCGG ACTGCAGTTA CTGATTGATC GAACAGATTT TCGCGAAAAT ATCAAAATCG AATTGTTGAG CATCTCCAGG CAGGACCTTC TGGAGGATTT TGAGGACTCC CCCGAAGTGG TCCAGTCGGG ACTTTACAAG CACGTCTACA CCGCTGAATA CGGCCAGTTT GGTGGCAATC CGGTTGGTGC AATCATTGCC AACTATTTCT TTTCCCCAAG CGCTCCCGAT GTCAAGACCA TGCAGTACGT TTCAAGTGTT GCCTGTATGG CACACGCACC ATTTATCGCG GCGGCGGGGC CCAATTTTTT CGGGCTTGAG CAGTTCACCG GTCTGCCTGA CCTCAAAGAC TTGAGAGATC ATTTCGAAGG CCCACAGTTC GCCAAATGGC AGAGCTTCCG CCAGCAAGAA GACGCTCGAT ACCTGGCACT GACAGTGCCA CGTTTTCTTT TGCGCAGCCC TTACGAGCCC GAGGAAAATC CGGTTAAAAC GTTTGCCTAC AAGGAGAATG TTGCGAACAG TCACGAGCAC TATCTGTGGG GGAACACGGC GTATGCATTC GCGACGAAGC TGACAGACAG CTTCGCCAAA TTCCGCTGGT GTCCTAACAT CATCGGGCCG TTGAGCGGCG GTGCCGTCGA AGATCTTCCT TTGCATCACT TCCACAGCAT GGGCGAGATC GAGACCAAGA TCCCGACTGA AGTGCTGGTC TCTGATCGTC GTGAGTACGA GCTGGCCGAG GAAGGGTTCA TTGCATTGAC CATGCGCAAA GGAAGCGACA ACGCCGCCTT TTTCTCGGCG AGCTCAGTGC AGAAGCCGAA GTTTTTCGGC AACAGCCCGG AAGGTAAGAC AGCCGAACTC AATTACAGGC TGGGTACTCA ACTGCCGTAC ATGATGGTGG TCAACCGACT GGCGCATTAT CTCAAGGTCT TGCAGCGGGA ACAGATAGGC TCCTGGAAAG AACGAGCGGA TCTCGAGGCT CAACTCAATA AATGGATTCG CCAGTATATT GCAGACCAGG AAAATCCAAG TTCTGAAGTA CGTGGACGGC GTCCGTTACG CTCTGCGCAA ATCATCGTCA GTGACGTGGA AGGTGATCCT GGCTGGTACC GGGTCAGTTT GAATGTTCGT CCTCATTTTA AATACATGGG CGCTGATTTC ACCTTGTCTC TGGTCGGCAA GATGGACAAG GAATAG
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Protein sequence | MTSKAMQQGT VSEFQHGILD QIIAETRLSP DDDAYEIAKR GVAAFIEELL KPHNSNEPVK KALVDRMITE IDAKLSQQMD EIIHHAEFQA LEASWRGLQL LIDRTDFREN IKIELLSISR QDLLEDFEDS PEVVQSGLYK HVYTAEYGQF GGNPVGAIIA NYFFSPSAPD VKTMQYVSSV ACMAHAPFIA AAGPNFFGLE QFTGLPDLKD LRDHFEGPQF AKWQSFRQQE DARYLALTVP RFLLRSPYEP EENPVKTFAY KENVANSHEH YLWGNTAYAF ATKLTDSFAK FRWCPNIIGP LSGGAVEDLP LHHFHSMGEI ETKIPTEVLV SDRREYELAE EGFIALTMRK GSDNAAFFSA SSVQKPKFFG NSPEGKTAEL NYRLGTQLPY MMVVNRLAHY LKVLQREQIG SWKERADLEA QLNKWIRQYI ADQENPSSEV RGRRPLRSAQ IIVSDVEGDP GWYRVSLNVR PHFKYMGADF TLSLVGKMDK E
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