| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2348 |
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| Symbol | |
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| ID | 1183999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2603819 |
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| End bp | 2604673 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637393725 |
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| Product | shikimate 5-dehydrogenase, putative |
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| Protein accession | NP_792165 |
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| Protein GI | 28869546 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.43472 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCATG CTGAACACAC CTCCGTACTC GCCGGCCTGA TCGGCTCCGG CATCCAGGCT
TCGCGAACGC CCGCCATGCA TGAGCACGAA GGCGATGCAC AGGGCCTGCG CTACCTGTAC
CGGCTGATCG ATATCGACGC GCTGCAACTG GACATCAACG CCCTGCCCCG GCTTGTCGAA
AGCGCGCAGA ACTGCGGTTT TACCGGCCTG AATATCACCT TTCCCTGCAA ACAGGCGGTC
ATCCCGTTGC TGGACGAACT GTCCGACGAA GCGCGCGGCA TCGGTGCGGT CAACACCGTG
GTTTTCAAGG ACGGAAAACG CATCGGGCAT AACACCGACT GTCTGGGTTT TGCCGAAGGT
TTCCAGCGCG GGCTGGACAA AGCGCCACGT CAGCATGTGG TGCAAATGGG CGCAGGTGGT
GCGGGCGCTG CCGTGGCTCA TGCGCTGCTG AGCGCAGGCG TCGAGCGCCT CACCGTGTTC
GAGGTCGAGC CGCAGCGTGC GCAAGGCCTG GTGGACAACC TCAATGAGCA TTTCGGTGCC
GGACGCGCGC AGGTCGGTCT TGACTTGCCT GCGGCAATGG CCGAAGCCGA CGGGCTGGTC
AATACCACGC CGGTGGGCAT GGCCAAGCTG CCGGGCACGC CGTTGCCGGT TGAACTGCTG
CGGCCCGCGC TGTGGGTGGC TGAAATCATT TACTTCCCGC TGGAAACCGA GCTGCTCAAG
CACGCCCGCA CACTGGGCTG CCGTACGCTG GATGGCAGCA CTATGGCGGT GTTTCAGGCG
GTCAAGGCGT TCGAGCTGTT CAGTGGCCGG TCCGCTGATG CGCAACGGAT GATGGCGCAC
TTCCACACCC TGTAA
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| Protein sequence | MTHAEHTSVL AGLIGSGIQA SRTPAMHEHE GDAQGLRYLY RLIDIDALQL DINALPRLVE
SAQNCGFTGL NITFPCKQAV IPLLDELSDE ARGIGAVNTV VFKDGKRIGH NTDCLGFAEG
FQRGLDKAPR QHVVQMGAGG AGAAVAHALL SAGVERLTVF EVEPQRAQGL VDNLNEHFGA
GRAQVGLDLP AAMAEADGLV NTTPVGMAKL PGTPLPVELL RPALWVAEII YFPLETELLK
HARTLGCRTL DGSTMAVFQA VKAFELFSGR SADAQRMMAH FHTL
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