Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4985 |
Symbol | |
ID | 1043372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 5679937 |
End bp | 5680656 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637148385 |
Product | 16S ribosomal RNA methyltransferase RsmE |
Protein accession | NP_747087 |
Protein GI | 26991662 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0506786 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACTGT CCCGCTTCTT CATCGACGCC CCCCTGAGCC TTGGCGAGCA CGACCTGCCC GAGGCCCAGG CCCATTACAT TGGCCGCGTG CTGCGCATGG CACCCGGCGA CGCCGTGCAG CTGTTCGATG GCAGCGGCCA GGAATACCGT GGTCAGTTGC TCGAGGTGGG CAAGAAAACT GTCCGCGTCA GCCTTGACCA GGCCTTTGCC GGCCAGGCCG ATTCACCGCT GCATGTGCAC CTGGGCCAGG GCCTTTCCCG TGGCGAGCGC ATGGACTGGG CGATCCAGAA GGCCACCGAG CTTGGTGCCA ACGAAATCAC CCCGATCGTC AGCGAGCGCT GCGAAGTGCG CCTGAAAGAC GAACGCGCCG ACAAGCGCCT GGCCCACTGG CGCCAAGTGG CGATCAGCGC CTGTGAACAA TGCGGGCGTT CTACCTTGCC CGTCATCCAC CCACCCGTGA CCCTGGCCGA ATGGTTGAGC AGCACCAAGG CTGACCTGAA GCTGGTCCTG CACCCGGTGG CTGAGCCGCT TATCAGCCAT GAAAAGCCCG CCACCCTGGC CTTCGTGATC GGCCCCGAAG GCGGCCTTAG CGAAGCCGAG GTCGAGCAGG CCAAAGCCGC CGGCTTCCAC GCAGCACGCC TTGGCCCGCG CGTGCTGCGC ACCGAGACCG CGCCGGTGGT GGCGCTGTCG GTGGCACAGC AGTTGTGGGG CGACTTTTAA
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Protein sequence | MRLSRFFIDA PLSLGEHDLP EAQAHYIGRV LRMAPGDAVQ LFDGSGQEYR GQLLEVGKKT VRVSLDQAFA GQADSPLHVH LGQGLSRGER MDWAIQKATE LGANEITPIV SERCEVRLKD ERADKRLAHW RQVAISACEQ CGRSTLPVIH PPVTLAEWLS STKADLKLVL HPVAEPLISH EKPATLAFVI GPEGGLSEAE VEQAKAAGFH AARLGPRVLR TETAPVVALS VAQQLWGDF
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