| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4591 |
|---|
| Symbol | rnd |
|---|
| ID | 1045092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 5208999 |
|---|
| End bp | 5210132 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637147989 |
|---|
| Product | ribonuclease D |
|---|
| Protein accession | NP_746700 |
|---|
| Protein GI | 26991275 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCATCG AAATTCACTG GATCCGTGAC GACCAGAGCC TGGCCGAACA CTGCCGCGAC
TGGCACCAAC TGCCCTTCGT CGCCGTCGAC ACCGAATTCA TGCGGGTAGA CACCTTTTAC
CCGAAAGCCG GGCTGATCCA GATCGGCGAC GGCCAACGCG CCTTCCTGAT CGACCCGCTG
CTGATCGGCA ACTGGCAACC CTTGGCCGAC CTGCTGGAAG ACAGCGCTGT GGTCAAGGTG
CTGCACGCCT GCAGCGAAGA CCTCGAAGTG CTGCTGCGCC TGACCGGCAA GCTGCCTCAG
CCGCTGTTCG ACACTCAGCT GGCCGCCGGT TACCTGAACC TGGGCTTCTC GATGGGCTAT
TCGCGCCTGG TGCAGGAAGT GCTGGGCATC GAATTGCCCA AAGGCGAAAC CCGTTCCGAC
TGGCTGCAAC GCCCGCTCTC GGAAACCCAG GTCAGCTACG CTGCCGAAGA TGCCGTGCAC
CTGGCCGAGC TTTTCACCGT GCTGCGCCCG CGGCTGAGTG ACGACAAGTA TGCCTGGGTG
CTGGAAGACG GCGCCGAGCT GGTGGCTGCG TTGCGCCGTG AAGTCGAGCC CGAAAGCCTG
TACCGCGACG TCAAGCTGGC CTGGAAGCTG GCGCCTCAAC AACTGGCAGT GCTACGTGAG
CTGTGCGCCT GGCGCGAACG CGAAGCGCGC AACCGCGATG TGCCGCGTAA TCGTATCCTC
AAGGAGCACT CGCTGTGGCC CATGGCCAAA AGCCAGCCGA ACAACCTGTC GGCCTTGGCC
AAGATCGACG AGATGCACCC GCGCACCATT CGTCAGGACG GTGAGTTCCT CATCCAGCTG
ATCAAGCGCG CCGCCAGCCT GCCGGCCGAG CAATGGCCTG CGCCCTTGCC TGAGCCGCTT
CCGATCGAGG CTGCTGGCCT TCTCAAGCAG CTGCGTGCCA TCGGCCAGGC CGAAGGCGAG
CGCCTGGGGA TTGCACCCGA GCTGATGCTG CGCAAGAAAG CCCTGGAGGC GCTGCTCAAG
AGCGGATACC CCAATGGCCC TTATCAACTG CCCGATTCGC TGCGCGGCTG GCGCCGTGAG
CGCATGGGCC AGGCCCTGCT GGACAACCTG GCAGGTGCCG GAGAAACCCG ATGA
|
|---|
| Protein sequence | MAIEIHWIRD DQSLAEHCRD WHQLPFVAVD TEFMRVDTFY PKAGLIQIGD GQRAFLIDPL
LIGNWQPLAD LLEDSAVVKV LHACSEDLEV LLRLTGKLPQ PLFDTQLAAG YLNLGFSMGY
SRLVQEVLGI ELPKGETRSD WLQRPLSETQ VSYAAEDAVH LAELFTVLRP RLSDDKYAWV
LEDGAELVAA LRREVEPESL YRDVKLAWKL APQQLAVLRE LCAWREREAR NRDVPRNRIL
KEHSLWPMAK SQPNNLSALA KIDEMHPRTI RQDGEFLIQL IKRAASLPAE QWPAPLPEPL
PIEAAGLLKQ LRAIGQAEGE RLGIAPELML RKKALEALLK SGYPNGPYQL PDSLRGWRRE
RMGQALLDNL AGAGETR
|
|---|
| |