Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3889 |
Symbol | |
ID | 1046676 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 4406543 |
End bp | 4407841 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637147298 |
Product | phage integrase, putative |
Protein accession | NP_746019 |
Protein GI | 26990594 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0582] Integrase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000353876 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCGCGA CCCGCGAAGT GAAGTTGAGC GAGGCCGAGG TGCGGCGTCA GGCGACCGAC AAGTCGGTGC GCGACCTGCG TGACCCGCGT CACCCCGGCC TGTACCTGCG CTTTTGGAGC AGCCGTGAGC GTGGTACCTG GCACCTGGTG CGCGGCAAGA AATGGGTACC GATCGCCCGC TGGCCTGAGT TGAGCGTGGC GGCGGTGCTG GCCGAGCTGC CCGCGCTGCG TCAGCGCCTG ATGCGCCACC CGGCCACCGC ACCGGTAGTG TCGGGCATGG CCACCGTGGG CCAACTGCTC GACTGGTATG TCGACCGCAT GAGCCATGAT CGCTCGTTGT CTGCAAAGCG TAAGGCTGCC ACCCGCGCAG CAATTGGGCA GCATGTGCGG CCGTGCTTAG GCGATCTGCC GATCAAGTAC ATCACCGCCG AGCTGATTGA TAAGCACCTG ATCTGGCCCG GCCAGGCCAA GCTGTCCCTG TCCTACCTGC GACAGATGTT CGGCATGCTG CTGACCGCCT TCCGCCAGGC CTTGAAGCTG GGGATGATCG ATAGCAATCC CATGGCCGGG GTGCGCTTCA ACGACTTCAC CAAGGCCAAG ATCCTGCCCA AGGCGGCCCG CCTGCGCAGC GTGCAGTTGC CGGAGCTGAT GCAGCAGCTG GCCCAGGCCT TCGAGGCAGC CCCGAATGAC GCCATGCTGG CCCTGATGAT GCTGGCCCAC GGTACCCGGA TCGGTGAGAC CCGCATGGCG CGCTGGAGTG AGGTCTCCTT GGCGGCGTCC GAGTGGTTCA TCCCGGCAGC CCACACCAAG ACCCGCACCG AACATCGCCT GCCACTGACC GCCCAGCTCA AGGCGCTGCT GACCCGCTAT CGGGGCATTC AGCAGGCCCG GGGTTATGAA GGCGTCTACC TGTTCCCGAA CCGTCGCGGC CACTGCCTGA GTGAGACCCA GGCGAGCATG GTGTTCACCC GGCTGGGGCA GGGCGAGTGG ACCAGCCACG ACCTGCGCAA GGTGTCCCGC AGCACCTGGA CGGACCTCGG CATCGACGGC CACATCGGCG AGATGCTGCT GAACCACACG CTGGGCAAGA TCGCCAGCAC CTACATCCAC ACCCAGGCCA TGGAGCAGCG CAAGTTGGCG CTGGAGAAGT GGCACGCCTG GCTTGATCGG ATCGGCTTCG CAGCCATCCA CGGCCTTAAA GAGGCCTTAT TTGAAATCCC GCAGAAATCG CCACAAGCCA ATGGCGGCGA GGCCTCAGGC GACCTTAGCG AATTAGTATT TAGCGAGGAT TCGAAATGA
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Protein sequence | MSATREVKLS EAEVRRQATD KSVRDLRDPR HPGLYLRFWS SRERGTWHLV RGKKWVPIAR WPELSVAAVL AELPALRQRL MRHPATAPVV SGMATVGQLL DWYVDRMSHD RSLSAKRKAA TRAAIGQHVR PCLGDLPIKY ITAELIDKHL IWPGQAKLSL SYLRQMFGML LTAFRQALKL GMIDSNPMAG VRFNDFTKAK ILPKAARLRS VQLPELMQQL AQAFEAAPND AMLALMMLAH GTRIGETRMA RWSEVSLAAS EWFIPAAHTK TRTEHRLPLT AQLKALLTRY RGIQQARGYE GVYLFPNRRG HCLSETQASM VFTRLGQGEW TSHDLRKVSR STWTDLGIDG HIGEMLLNHT LGKIASTYIH TQAMEQRKLA LEKWHAWLDR IGFAAIHGLK EALFEIPQKS PQANGGEASG DLSELVFSED SK
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