Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_2997 |
Symbol | |
ID | 1043072 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 3393504 |
End bp | 3394403 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637146419 |
Product | LysR family transcriptional regulator |
Protein accession | NP_745141 |
Protein GI | 26989716 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00848262 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACTACCC TGGAGGCCCT GCCCGAACCC AAGCTGCTGC AGCTGTTCGA CGTGCTGTAT CAATGCCGCA GCGTGACCCG CGCCGCCGAA CAGCTGGGGC AGAGCCAGCC GACCATCAGC ATCTGGCTGG CGCGCCTGCG CGAGCAATTG AACGACCCGC TGTTCGTGCG CACGCCAGGC GGCATGGCCC CTACCCCGCG CGCCGATCAG CTGATAGGGC CGTGCCGCGA GGTGCTGGAA TCGCTGCGCC GGCTGACCGC CTGGGAGCCG CAGTTCATCG CCGCCACAGC GCAGCGGCGT TTTCGCCTGT GTGTCAGCGA TGCCAGCCAC ATCACCTTGC TGCCCAGCAT CCTCAACCAT CTGCGCAGCC ATGCGCCGGG CATCCGCCTG GAGGCGGCGC GGATCGACGG CAATACCGAG AGCGCGCTGG AATCGGGCGA AGCGGACCTG GCCATCGGCT TCGTGCCCTG GTTGGGCGGG GGGATGTATC AACAGGTGCT GTTCGAGCAG GACTGGGTGT GCCTGAGCAA CCCGCAGCAT CCGCGCCTGG GCGATGGCAT GAGCCTGGAG CGGTATCGGG CCGAGGGGCA TGTGCAGATC AGTTTCGGCA CCGGGCAGAA GCTGCTGGAA GCGGGATTGG CGCGGGCCGG GATCGAACGG CGGATCATGC TCGAGCTGCC AGCGTTTCTC GGGCTGGGGA AGATAATCGG GACTACCGAC CTACTGGGCA CCTTGCCGCG GCATATCGGG CAGACACTGG CCGATATGCA TGGGCTACAG GTCCATGACT GCCCGTTCGA AGTGGAGGGA TTCACGGTCA AACAGCATTG GCACGCCCGC TATCATCAGG ACAATGGAAA TCGATGGTTG AGGGAGGTCG TTCGCGGATT GTTCCAGTGA
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Protein sequence | MTTLEALPEP KLLQLFDVLY QCRSVTRAAE QLGQSQPTIS IWLARLREQL NDPLFVRTPG GMAPTPRADQ LIGPCREVLE SLRRLTAWEP QFIAATAQRR FRLCVSDASH ITLLPSILNH LRSHAPGIRL EAARIDGNTE SALESGEADL AIGFVPWLGG GMYQQVLFEQ DWVCLSNPQH PRLGDGMSLE RYRAEGHVQI SFGTGQKLLE AGLARAGIER RIMLELPAFL GLGKIIGTTD LLGTLPRHIG QTLADMHGLQ VHDCPFEVEG FTVKQHWHAR YHQDNGNRWL REVVRGLFQ
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