| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG0093 |
|---|
| Symbol | |
|---|
| ID | 2552602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Porphyromonas gingivalis W83 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002950 |
|---|
| Strand | - |
|---|
| Start bp | 108733 |
|---|
| End bp | 109728 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637148903 |
|---|
| Product | HlyD family secretion protein |
|---|
| Protein accession | NP_904441 |
|---|
| Protein GI | 34539962 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0320304 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGACA ACAAACAACG TAATATCGTA TTCCCGGCGT TTCTCCTCTT GCTGGGAGTC
ATCGCAGTGG TGACGATCGT TGGTTTTTTC ATGCTCAGAC CGGCCGAGGA GATTATCCAA
GGACAGATAG AAGTGACCGA ATACCGAGTG TCCAGCAAAG TGCCCGGGCG CATCAAGGAA
CTTAGGGTAT CCGAGGGACA GCAGGTGCAG GCCGGCGATA CCCTCGCTGT CATCGAAGCC
CCCGACGTAG CGGCTAAGAT GGAGCAGGCA AAGGCTGCCG AAGCAGCTGC ACAGGCTCAG
AACGCCAAGG CTCTCAAAGG AGCACGCAGC GAACAGATAC AGGCAGCCTA TGAGATGTGG
CAGAAAGCTC AGGCCGGCGT AGCCATAGCG ACCAAGACAC ACCAGCGCGT GCAGAACCTC
TATGACCAGG GAGTGGTACC GGCTCAGAAG TTGGACGAAG CCACTGCCCA GCGCGATGCG
GCCATCGCTA CGCAAAAAGC GGCCGAAGCC CAGTACAATA TGGCTCGCAA CGGTGCCGAA
CGCGAAGACA AGCTGGCAGC TTCTGCCCTC GTCGATAGAG CGAGAGGAGC CGTCGCCGAG
GTGGAGTCGT ACATCAACGA AACCTACCTC ATCGCCCCAC GGGCAGGCGA AGTGTCGGAG
ATATTCCCCA AAGCCGGCGA ACTCGTAGGT ACCGGCGCAC CTATCATGAA TATCGCCGAG
ATGGGCGATA TGTGGGCCAG CTTTGCCGTT CGTGAGGATT TCCTCAGCAG CATGACCATG
GGAGCCGTTC TGGAGACTGT GGTGCCGGCT CTGAATGAAG AAAAAGTACG CTTCAAGATC
ACATTCATCA AGAACATGGG TACCTATGCT GCCTGGAAAG CGACCAAGAC AACAGGGCAG
TACGACCTGA AGACCTTCGA GGTAAAGGCC ACCCTTGCGG ATAAAGACAA GGCACAAAAG
CTACGCCCGG GTATGTCCGT GATCATACGC AAGTAA
|
|---|
| Protein sequence | MTDNKQRNIV FPAFLLLLGV IAVVTIVGFF MLRPAEEIIQ GQIEVTEYRV SSKVPGRIKE
LRVSEGQQVQ AGDTLAVIEA PDVAAKMEQA KAAEAAAQAQ NAKALKGARS EQIQAAYEMW
QKAQAGVAIA TKTHQRVQNL YDQGVVPAQK LDEATAQRDA AIATQKAAEA QYNMARNGAE
REDKLAASAL VDRARGAVAE VESYINETYL IAPRAGEVSE IFPKAGELVG TGAPIMNIAE
MGDMWASFAV REDFLSSMTM GAVLETVVPA LNEEKVRFKI TFIKNMGTYA AWKATKTTGQ
YDLKTFEVKA TLADKDKAQK LRPGMSVIIR K
|
|---|
| |