Gene PG0028 details

Gene Information

• Locus tag: PG0028
• Symbol: ispF
• ID: 2551764
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Porphyromonas gingivalis W83
• Kingdom: Bacteria
• Replicon accession: NC_002950
• Strand: +
• Start bp: 34003
• End bp: 34491
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637148845
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: NP_904384
• Protein GI: 34539905
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 32
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGAAGC CTTTTCGAAT AGGATTCGGT TTCGATGTAC ACCGCTTGTC CGAAGGTTAT 
CCTTTGTGGA TGGGCGGTGT TCGTCTGGAA CATTCCAAGG GCTTGGAGGG ACATTCCGAT 
GCCGATGTGC TCATTCATGC TATTTGTGAT GCCCTGCTGG GTGCTGCCGC TTTGCGTGAT 
ATCGGCTATC ACTTTCCTCC TTCGGATCCT CAATATAAGG GGATCGATAG TAAGATCCTG 
TTGGCTCGCG TTATGGAATT GGTGCGTTCA CAGGGTTATG AATTGGGTAA TATCGATGCT 
ACTATTGCGG CGGAACAGCC CAAACTGAAT CCACATATAC CGGATATGCA GCGTGTCTTG 
GCTGAGGTGA TACAGGTGGA GGTGTCGGAT ATTTCACTGA AAGCCACAAC GACGGAGAAA 
CTTGGCTTCA CAGGACGAGA GGAAGGCATT TCCGCCTATG CCGTGGCCTT GCTCATTGCT 
GCCGTCTGA 

 

Protein sequence

MKKPFRIGFG FDVHRLSEGY PLWMGGVRLE HSKGLEGHSD ADVLIHAICD ALLGAAALRD 
IGYHFPPSDP QYKGIDSKIL LARVMELVRS QGYELGNIDA TIAAEQPKLN PHIPDMQRVL 
AEVIQVEVSD ISLKATTTEK LGFTGREEGI SAYAVALLIA AV