| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_57940 |
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| Symbol | rpoN |
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| ID | 4383011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | + |
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| Start bp | 5156461 |
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| End bp | 5157954 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639327254 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_792807 |
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| Protein GI | 116052494 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 82 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCAT CGCTAGTCCT CAAGATGGGC CAGCAGCTGA CGATGACGCC GCAGCTGCAA
CAGGCCATAC GCCTCCTCCA GCTATCCACC CTGGACCTCC AGCAGGAAAT CCAGGAAGCG
CTGGAATCCA ATCCCATGCT CGAACGCCAG GAAGACGGCG ACGATTTCGA CAACAGCGAC
CCTCTCGCCG ATGGCGCCGA ACAGGCGGCC AGCGCGCCCC AGGAGAGCCC TCTCCAGGAA
AGCGCCACGC CCAGCGTCGA AAGCCTCGAC GACGACCAGT GGAGCGAACG CATACCCAGC
GAGTTGCCGG TGGATACCGC CTGGGAAGAC ATCTACCAGA CCAGCGCCAG CAGCCTGCCC
AGCAACGACG ATGACGAATG GGACTTCACC GCGCGCACCA GCAGCGGCGA GAGCCTGCAC
AGCCACCTGC TCTGGCAGGT CAACCTGGCA CCGATGTCGG ACACCGATCG GATGATCGCG
GTGACCATCA TCGATAGCAT CAACAACGAT GGCTATCTCG AAGAGTCCCT CGAAGAAATC
CTCGCCGCCA TCGATCCGGA ACTGGACGTC GAACTCGACG AAGTGGAAGT CGTGCTGCGC
CGCATCCAGC AACTGGAACC CGCCGGCATC GGCGCCCGCA ACCTGCGCGA GTGCCTGCTG
CTGCAACTGC GCCAGTTGCC GTCCACCACG CCCTGGCTGA ACGAAGCGCT GCGCCTGGTA
TCCGACTACC TCGACCTGCT CGGCGGCCGC GACTACAGCC AATTGATGCG GCGCATGAAG
CTCAAGGAAG ACGAACTGCG CCAGGTCATC GAGCTGATCC AGTGCCTGCA TCCCCGGCCC
GGTTCGCAGA TCGAATCGAG CGAAGCCGAA TACATCGTCC CCGACGTCAT TGTGCGCAAG
GACAACGAGC GCTGGCTGGT CGAGCTGAAC CAGGAGGCGA TGCCGCGCCT GCGCGTCAAC
GCCACCTACG CCGGCATGGT CCGCCGCGCC GACAGCAGCG CCGACAATAC CTTCATGCGC
AACCAGTTGC AGGAAGCCCG CTGGTTCATC AAGAGCCTGC AGAGCCGCAA CGAAACGCTG
ATGAAGGTCG CCACCCAGAT CGTCGAGCAC CAGCGCGGTT TCCTCGACTA CGGCGAAGAA
GCCATGAAGC CGCTGGTCCT GCACGACATC GCCGAAGCGG TGGGCATGCA CGAATCGACC
ATTTCGCGGG TCACCACGCA GAAATACATG CATACGCCGC GCGGCATTTT CGAGCTGAAA
TATTTCTTTT CAAGTCACGT CAGTACCGCT GAAGGCGGGG AATGCTCGTC CACCGCGATC
CGCGCGATCA TCAAGAAACT GGTGGCCGCG GAAAATGCGA AAAAGCCATT GAGCGACAGC
AAGATCGCTG GTTTACTGGA GGCACAGGGC ATTCAAGTGG CTCGCCGCAC CGTCGCCAAA
TACCGCGAAT CCCTGGGCAT AGCCCCTTCG AGCGAGCGCA AGCGACTGGT GTGA
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| Protein sequence | MKPSLVLKMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EDGDDFDNSD
PLADGAEQAA SAPQESPLQE SATPSVESLD DDQWSERIPS ELPVDTAWED IYQTSASSLP
SNDDDEWDFT ARTSSGESLH SHLLWQVNLA PMSDTDRMIA VTIIDSINND GYLEESLEEI
LAAIDPELDV ELDEVEVVLR RIQQLEPAGI GARNLRECLL LQLRQLPSTT PWLNEALRLV
SDYLDLLGGR DYSQLMRRMK LKEDELRQVI ELIQCLHPRP GSQIESSEAE YIVPDVIVRK
DNERWLVELN QEAMPRLRVN ATYAGMVRRA DSSADNTFMR NQLQEARWFI KSLQSRNETL
MKVATQIVEH QRGFLDYGEE AMKPLVLHDI AEAVGMHEST ISRVTTQKYM HTPRGIFELK
YFFSSHVSTA EGGECSSTAI RAIIKKLVAA ENAKKPLSDS KIAGLLEAQG IQVARRTVAK
YRESLGIAPS SERKRLV
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