| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1054 |
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| Symbol | |
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| ID | 4031660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 1181525 |
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| End bp | 1183729 |
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| Gene Length | 2205 bp |
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| Protein Length | 734 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637969552 |
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| Product | lipopolysaccharide biosynthesis protein |
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| Protein accession | YP_576362 |
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| Protein GI | 92116633 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3754] Lipopolysaccharide biosynthesis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.393158 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAGA TTGCGGAGCG CGGCGTCAGG ACTGCGAAGG ACACGCAACC CGTTGCCAGT
CCTATTCCAC AAGAGGAAAA TCTTCAAAAC TCGTTCCTGG ATCCTGGTCT AGGAGATCTG
GAGTCGGGCG CGCGCCTGCG TGGTGCGATA CTGGAGTATT CCGGCCGGGA AATCTCCGGC
TGGATCGTCG ATGCGCGCTC GCCCAAGGCA TCGGTTTCTC TTTCTCTCTG TGTCGGGTCC
CATGCGATCG AAGAGACGAG AACGGACCGC GCGGCTCCTA CCGGAATTGG CTCTCGCAAG
GCATTCGGTC GCCCCGGGTT TCGCATCGAT CTGGCGAACC CGGCGGCGCG TCGACGCCTG
GCGCGCGCGC TCAGAAACAC ATTGGCGGAT CCGGGCCAGA CGCAGATCTA CCTCCGCGTC
AGCCTGGACG ATGGAGAATT TTTTGAGATT CCGCTGTTTG ACAACATCGC GTCCGATGAA
CTGGTTGTCG CACTGGGATT TTCGAGCGCC GATTACACTG ATCTGCTGAT TCCGAATAAT
AACAGGGTCG TCACGTCTGC TCCGGATCCG GCCGGGAAGC AGGTGCGCCA TGTTTGTTTC
TATCTCCCCC AGTTTCATGC GTTCGCGGAG AACGACCGAT GGTGGGGACC CGGCTTTACC
GAATGGACCA ACATTTCGCG CATGCGTCCT CAGTTCCCGG CTCATCAATC TCCCTGGTTG
CCGGCGGACC TCGGCTTTTA TGATGTGAGA TTGACGGAGA CCCGTCGGCA ACAGGCCGAG
TTGGCCCGCC GCTACGGCAT CCACGGCTTC TGCTACTACG TGTACTGGTT CCAGGGGCGC
AGACTTCTCG AACGACCGTT GGAACTCCTT CTGGAGGATG GAGAACCGGA TCTGCCCTTC
TGCATTTGCT GGGCGAATGA GAACTGGTCA CGCCGCTGGG ACGGCTCGGA TGCCGAACTC
CTGCTCGGAC AAAATCATTC GCTCGATGAC GATGTTCGCT TTATCGACGA TATGGCACAG
CTTCTGCTCG ACGAACGTTA CATCACGGTG GACGGCCGCA AGATCATTCT CATTTACCGG
CCGTCGCTAT TGCCGGACAG GCAGCGCCTG TTCGAGATCT GGCGCGCAAG AGCAAGGGAA
CTGGGAATCG GAGAGATTCT GATCTGCAAC GCCATGACGT TCGGAGAGTT TGATCCGCGT
GACCTTAACT GCGATGCCGC AGTTGAGTTT CCTCCGCATA CCGTCTCGAC GATGGAGCAG
CCGCTCTCGG AGCTGGGCGC CCCCGCGAGC TTTACGGGTA AGGTTTACGA TTATGTCGAT
GCCGTGCGCT CGTCGTTGGG CAAGACATAC GATTTTCCCT ATTTCCCGGC CGTTATGCCG
CGCTGGGACA ATACGCCCCG CAAGGGTTCA CGGGGGCACA TCTTCAACAG GTCGAGTCCG
GAGGCGTTCG AAGTATGGCT GCGGGATGCC GCCAACCGAG CGAGAAAAAG CGCATTTGCG
GAGCCGATCG TTTTCATCAA CTCCTGGAAC GAATGGGCCG AAGGGGCCCA CCTGGAGCCG
GACTCGCGGT ATGGACGAGC ATTTCTGGAG GCGGTGAGAA GGGTGGCATC GTCCGAGCCG
ATCTCGACCC AGGTCCGTTC GAATCCGGAT TTGCTGGACT GCCTGAGCCG GCAGGAGCTG
GAGCGAGCGG TGAAGGAAGC GGCCACTCAC GTTCAACTGC TCGCGACCCT TCATCGATCG
GAGATGGCCT ATTCGGGCTT GCAGCATACG CGAAACGGGA TTCCCGCGGA GGCTCAAGGT
GCGTCCGAGA ATCCGCCTGA ATCACTGCTC GTCATTGAGA ACGTCAATTC TCAAACGAGC
GAACGGGTGG TGGTCGATCC GCGATCGATC GTCCTCATAC GAGGGTGGGT CTGTGCAGGT
GAGGCTTTCG AGGCGAGCAA GCACAGGACG GCTTTCCTGA TCCTCATCTC CGCGGACCCA
GAAAAGCAGG ATCAGAACGG TTACTGCCTG GTCGTGGACT GGCACGAGCG CTTTGATGTC
AAGGAGTATA TGAGAGCGAA AAGCAGGGAT TGCTATTTCG GCTTCCAGCT CTCCTTTTTC
GTCCACGATA TTCCCGACGG AGAGTACCAG ATCGCGGTTC TGGAGGTGGG CGAGGGAAGC
CGTGCGCTCA TCAGGACGAA TCACTCGATC ATCGTTCGAC GTTGA
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| Protein sequence | MNKIAERGVR TAKDTQPVAS PIPQEENLQN SFLDPGLGDL ESGARLRGAI LEYSGREISG
WIVDARSPKA SVSLSLCVGS HAIEETRTDR AAPTGIGSRK AFGRPGFRID LANPAARRRL
ARALRNTLAD PGQTQIYLRV SLDDGEFFEI PLFDNIASDE LVVALGFSSA DYTDLLIPNN
NRVVTSAPDP AGKQVRHVCF YLPQFHAFAE NDRWWGPGFT EWTNISRMRP QFPAHQSPWL
PADLGFYDVR LTETRRQQAE LARRYGIHGF CYYVYWFQGR RLLERPLELL LEDGEPDLPF
CICWANENWS RRWDGSDAEL LLGQNHSLDD DVRFIDDMAQ LLLDERYITV DGRKIILIYR
PSLLPDRQRL FEIWRARARE LGIGEILICN AMTFGEFDPR DLNCDAAVEF PPHTVSTMEQ
PLSELGAPAS FTGKVYDYVD AVRSSLGKTY DFPYFPAVMP RWDNTPRKGS RGHIFNRSSP
EAFEVWLRDA ANRARKSAFA EPIVFINSWN EWAEGAHLEP DSRYGRAFLE AVRRVASSEP
ISTQVRSNPD LLDCLSRQEL ERAVKEAATH VQLLATLHRS EMAYSGLQHT RNGIPAEAQG
ASENPPESLL VIENVNSQTS ERVVVDPRSI VLIRGWVCAG EAFEASKHRT AFLILISADP
EKQDQNGYCL VVDWHERFDV KEYMRAKSRD CYFGFQLSFF VHDIPDGEYQ IAVLEVGEGS
RALIRTNHSI IVRR
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