| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0080 |
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| Symbol | |
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| ID | 4029618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 93054 |
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| End bp | 94781 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637968613 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_575441 |
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| Protein GI | 92115712 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.23298 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTTCT TCAAAAAATG GTCAATCGCA AAAGAAAATG CCGCGAAAAC CGCAGCGATC
AGTAAGTCTC AGGCCGTAAT CGAGTTCAGA CTCGACGGTA CGGTCATCAC CGCCAACGAG
AACTTTCTCA ACATCCTCGG TTACGGGCTG GCGGACGTTC AAGGCAAGCA CCACAGCATG
TTCGTGGAGG CCGACGAACG ATCCAGCGCC GCATACCGCG ACTTCTGGGC CAGGCTGAAT
CAGGGCGAGT CGCAATCGGC TGAGTATAAG CGCATCGACA GGGACGGCGA GGAGGTCTGG
GTTCAGGCTT CCTATCTTCC AGTGCTGGAT GCGAGGGGGA AACCGACAAA AGTCATCGAG
ATCGCGTCCG ACATCACCGC GAAAAAGATC GAGGCCCTGG ACCATGCGGG TCAGGTTTCC
GCCATCGAAC GCACACAGGC GGTGGTCGAA TTCAATCTGG ACGGCACGAT TATTACCGCA
AACAAAAACT TCCTCAACGC GTTGGGCTAC GCCCTTGGCG AAGTGCAGGG GAAGCATGAC
CGCATGTTCG TGGAGCCGTC GGAGCGAGCA GGTGCTGCCT ATCGCGAATT CTGGGCCAAA
CTGAATCAGG GTCAGGCTCA GTCGGCTGAA TGCAAGCGCA TTGGTAAAGC CGGAAACGAA
GTCTGGATTC AGGCGACCTA TAACCCGATC GCAGACGAGA ACGGCAAGCC CTTCAAGGTC
GTCACGTTCG CGACTGACGT AACCAGCCAG AAATTGAAGA TGGCCAATCT GGAAAGCCAG
ATCACAGCGA TCGGAAAGTC GCAGGCGGTC GTCGAATTCG GCATGGACGG AAAGGTTATT
ACCGCCAACG ATAATTCCCT GAAAACGTTC GGTTACTCCC TCGCCAAGGA GGTCCAGGGC
AAGCACCACA GCATGTTCGT GGAGGCGGGC GAGCGAGCCA GCACCGCATA CCGCGACTTC
TGGGCCAGGC TCAATCGGGG CGAGTCTCAA TCGGCCGAGT ACAAGCGTAT CGGCAAGGAT
GGCAAAGAGA TCTGGGTTCA GGCTTCCTAT AATCCGGTCC TGGACTCGAA GGGAAAACCG
ACGAAAGTTA TCCAGCTCGC GACCGATATC ACCGCCAGGA AGATCGAGGC TCTCGACAAT
GCGGGTCAGC TTGCCGCCAT CGATCGCGCG CAGGCGGTGG CCGCATTCAA CCTGGACGGC
ACGATTATTG CCGCCAACGA TAAGTACCTC AAGGCGATGG GCTACACCCT CGGCGAAGTA
CGGGGCAAGC ATGATGGCAT GTTCGTAGAG CCATCAGAGC GGGCAGGTGC TGCTTATCGC
GACTTCTGGG CACGCTTGAA TCGCGGCGAG TCTCAATCGG CCGAACACAA ACGTATCGGC
AAGGACGGCA AGGAAGTCTG GATCCAGGCC TCCTACACTC CGATACTCGA CCTCAACGGC
AAGCCGATCA AGGTTGTCGA ATACGCCACG GTGATCGAGT CGGTCGCGGA CGGTAGCGAA
GAGGGAAGCC TCTCCATCCA GGAGGCACCC GTGTCGGTGG CCAATCAGGC TGCCGATGAC
ATAACCTCAG AGTCCGTCGG GCCGAGCTTG AGCATGAGGC GGCTGGAGGC GAGCCGCAAG
AACGCGAGCG CTGGTCCGTC TCTATTCTCC AATCTCCTGG CGAATCTTCG GGACGGATTG
AGCAACGCGA TGGTTTCCTC GGCGAGAGCT GTGACCAACT TTTTGTGA
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| Protein sequence | MFFFKKWSIA KENAAKTAAI SKSQAVIEFR LDGTVITANE NFLNILGYGL ADVQGKHHSM
FVEADERSSA AYRDFWARLN QGESQSAEYK RIDRDGEEVW VQASYLPVLD ARGKPTKVIE
IASDITAKKI EALDHAGQVS AIERTQAVVE FNLDGTIITA NKNFLNALGY ALGEVQGKHD
RMFVEPSERA GAAYREFWAK LNQGQAQSAE CKRIGKAGNE VWIQATYNPI ADENGKPFKV
VTFATDVTSQ KLKMANLESQ ITAIGKSQAV VEFGMDGKVI TANDNSLKTF GYSLAKEVQG
KHHSMFVEAG ERASTAYRDF WARLNRGESQ SAEYKRIGKD GKEIWVQASY NPVLDSKGKP
TKVIQLATDI TARKIEALDN AGQLAAIDRA QAVAAFNLDG TIIAANDKYL KAMGYTLGEV
RGKHDGMFVE PSERAGAAYR DFWARLNRGE SQSAEHKRIG KDGKEVWIQA SYTPILDLNG
KPIKVVEYAT VIESVADGSE EGSLSIQEAP VSVANQAADD ITSESVGPSL SMRRLEASRK
NASAGPSLFS NLLANLRDGL SNAMVSSARA VTNFL
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