Gene Nham_0058 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0058 
Symbol 
ID4029768 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp67557 
End bp71045 
Gene Length3489 bp 
Protein Length1162 aa 
Translation table11 
GC content67% 
IMG OID637968591 
ProductUvrD/REP helicase 
Protein accessionYP_575419 
Protein GI92115690 
COG category[L] Replication, recombination and repair 
COG ID[COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 
TIGRFAM ID[TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.106754 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAAGCGC CTCGCCCCGT TCATCCCGAC GCCAGCGCGC GTCAGCAGCG CGCGTCCGAC 
CCGGCGACGT CGGTTTTCGT CTCGGCCAAT GCCGGATCGG GCAAGACCCA TGTGCTGGTG
CAACGCGTGA TCCGCCTGCT GCTCAATGGC GTTGATCCGG CGCGCATCCT CTGCATCACC
TTCACCAAGG CCGCCGCCGC CAACATGTCG GAGCGGGTGT TCTCGACGCT GGGACACTGG
GTCACGCTCG ACGATGAAGC CCTGAACGCG GCGCTGCGCG ACACCGGTAT CGCGCAGCCC
GATGCCTGGT CGCGCCAGCG CGCGCGCAAA CTGTTCGCGG CAGCACTGGA AACGCCGGGC
GGGCTGAAGG TGCAGACCAT CCACGCACTC TGCACGCGGC TGTTGCAGCA GTTTCCGTTC
GAGGCGCGGG TGCCGGCGCG TTTCAGCGTG CTCGACGAGC GCGACCAGAC CGGGATGATG
GAGCGCGCGA GCATCAGTGT CATGCTCGAT GCATCGCAGA ATCCCGACAG CCCCGCCGGC
CGCGCGCTGC AATACGCCAT GGGCGCGGCC GCCGACACGA CGCTGCGTGA CGTGGTCAAC
CAGGCCTGTC TCAGCCGCGA TCACTTCATG GCCTGGACCG AGGATCGCGG CATCGAGCAG
GCGATCAGCG ATGTGGCCGA CGCGCTCGAC GTCGATCCCG CCGAGCGCGT CGAGGATGTC
GAACGCGAGA TCGTCGACGG GCCGAACCTG CCAATATCTG AATGGGAAGC GCTCGCCGCG
ATTCTGGAAA CAGGCAACAA ATCCGACATC GAGCAGGCCA GACGCTTGCG CGAGGCGCAC
GCCATGATCG GCGAGGCGGC GCAAGCCGAT CGCTATCTCG ATGTCTTCCT GACCGGCGAT
TCCGTCTTGC GCAAATCCTT CGTCACCAAG AAGATCAGCG ATGTCAGACC CGACATCGCC
GCGATGCTCG ACCGGGAGAG CCAGCGTGTG ATCGCGCTGC TCGAACGCCG CCGCGCGCTG
ACCATCCGCG ACCGCACGCA ATCCCTTCTC GTCATCGCAA CCGCGGTCGC CGCCAACTAC
CGGCGCGAGA AGCAGGAGCG CGGCCTGCTC GATTACGACG ACCTGATCGA TAAGACGCTG
GCGATGCTGG ACCAGACCTC GCCCGGTTGG GTGCATTACA AGCTCGACCG CGGCGTCGAC
CATGTGCTGA TCGACGAGGC GCAGGATACC AGCCCGAAGC AATGGGACAT CGTCGAGCGC
ATCATCGCGG ACTTCACCAC CGGGGAAGGG GCGCGCGAGG GCGTCAGGCG GACGGTGTTC
GCGGTCGGCG ACGAGAAGCA GTCGATCTTC TCGTTCCAGG GCGCGGCCCC GCGCGAGTTC
GACGAACGGC GAAGCAAGCT GGAGCGGAAA TTCAGGGACG CCGAACTTCC GTTTCGCAAG
GAGGATTTCA TCTACTCGTT CCGCTCGGGG AAGACGATCC TGGAGTCCGT CGATTACGTG
TTCCGCGATG CCGCGATCTA TACCAGCATC CATGCGGTCG GCGCCCATCC GGTGCATGAA
TCGCTGGCGG ACGCAGCACC GGGCGTGGTC GATCTCTGGA GTCTGGAAGA GCGAGATGCG
CGACAGCAGA TCGAGGGCTG GCGCGCGCCG TTCGATGCGG TCTCCGCAAC CAGCTCCGAG
GTCAAGCTCG CCCGCCGCAT CCGCAACGAG GTCAAGACGC TGATCGCGCA GGGCACCATG
ACGGGGCATC TGGGTGACCG CCGCCCGCTC CGCTATGGCG ACATTCTGGT GCTGGTGCGG
CGGCGCGGCA ACGCGTTCGA CGCCATCATC CAGGCGCTGA AGCAATCCGG CATTCCCGTC
GCCGGCGCCG ACCGCCTCAA GCTGACCGAG CACATCGCGA TCATCGATCT GATGAACCTC
GCCGACGCGC TGCTGTTGCC GCGGGACGAT CTGGCGCTGG CGGTGGCGCT GAAGAGTCCG
CTGTTCGGCC TTGACGACGA CGACCTGTTT GCCATCGCAC ACAATCGCAA GGGCTCGCTG
CGCGACGCAC TCGCGGATCA CGCGACGGCC AACGACAAAT TCCGCGACGC ATTCGAGCGC
CTGAAGATGT GCGAAACCCG CGCCGCACAC GAATCGCCGT TCGCGTTCTA TGCGTGGCTG
CTGGGCGGAG ATGGCGGGCG GCGGCGAATC CTGCGCCGGC TCGGCCACGA GGCCAACGAC
GCGCTCGACG AATTCCTCGA ACTGGCGCTG ACTTACGAGC GCAAGGCGCC GGCATCCCAG
CAGGGGTTCA TGGCGTGGCT GCGCGCCGCC GACACGGACG TGAAGCGCGA CATGGAGATT
TCGCGCGACG AGGTGCGGGT GATGACGGTG CACGGCGCCA AGGGGCTCGA GGCCTCCGTG
GTGTTTCTCG CCGATACCGT GACGTCGCCG GCCGATACCG AGCGCCTCAA CCTGATCCGT
ATGTCGCGCG GCAACGCGCC CGCCCATGCA GCAGGCGTCA CGGTCTGGGC CGGCAGAAAG
GCTGAAGATC CGCCTGACGT GGTGAACGCC CGCGCGGCCA TGATCGCCGA GACCGAACAC
GAATATCGCC GCCTGCTTTA CGTGGCGATG ACGCGGGCGG CGGACCGCCT GATCGTCGGC
GGCTGCAAAC CCGGCAACCG CAAGGACGTG CGCGAGCACG CATGGTACGA CCTGATCGAC
AAGGGCCTTG GCAAATCCGG CCTCGCGATG CGGGAGATCG AGACCGCCGC CGGCACGGTC
AAGCGTTTCA CGCGGCCGGG GGAAACCGAA CCGGATGCCG CCGGTCCCGC AACGCCGGTT
GCCGCCGCAC CGATCGCGCT GCCGCCGTGG CTGCACAGCA TGGCCGCGCC GGAAGCGCCC
GCCGGGCCAT CGCTGCGGCC ATCGGATGCA GATGACAACG CGCATCACCG CATCTGGCCC
GGCGAGTCCC CGGACCAGCG CCGCCGCGCG CTGTTGCGCG GCACGCTGGT GCACCGCCTG
CTGCAATCGC TGCCTGATGT GCCGGTCGAT CGCCGCGGGG ACACCGCGCT GGCCTATCTC
GGGCGCAATG CGCGCGACTG GAGCGAGGCC GAGCGCGACG CACTGGCGGC GCAGGTGCTG
GCGTTGATCG GCGACTCCCA ATTCGCGCCG GTGTTCACGG ACGGCAGCCG GGCCGAGGTG
GCGATTGCAG GACGGCTGAC GACGCGACGG GGCGATCCCG TGCTGGTGTC CGGCCAGATC
GACCGGCTCG TGGTAACGCG GGAAGCGGTT CTGATCGTGG ATTTCAAGAC CAACCATGCC
CCGCCCCGAA ACCCCGCCGA CGCACCGCCG GCCTATGTCC GACAGCTCGC GCTCTATCGC
GCGGTGCTGG CCAGGCTGTA CCCGGAATTA CCGGTCAAAG CGGCGCTGCT CTGGACCGAG
ACGCCTGAAA TGATGGAGAT TTCGGCCCTA GCGCTCGATG CCGGGCTGGA AGCGATCATC
TCGATGTGA
 
Protein sequence
MKAPRPVHPD ASARQQRASD PATSVFVSAN AGSGKTHVLV QRVIRLLLNG VDPARILCIT 
FTKAAAANMS ERVFSTLGHW VTLDDEALNA ALRDTGIAQP DAWSRQRARK LFAAALETPG
GLKVQTIHAL CTRLLQQFPF EARVPARFSV LDERDQTGMM ERASISVMLD ASQNPDSPAG
RALQYAMGAA ADTTLRDVVN QACLSRDHFM AWTEDRGIEQ AISDVADALD VDPAERVEDV
EREIVDGPNL PISEWEALAA ILETGNKSDI EQARRLREAH AMIGEAAQAD RYLDVFLTGD
SVLRKSFVTK KISDVRPDIA AMLDRESQRV IALLERRRAL TIRDRTQSLL VIATAVAANY
RREKQERGLL DYDDLIDKTL AMLDQTSPGW VHYKLDRGVD HVLIDEAQDT SPKQWDIVER
IIADFTTGEG AREGVRRTVF AVGDEKQSIF SFQGAAPREF DERRSKLERK FRDAELPFRK
EDFIYSFRSG KTILESVDYV FRDAAIYTSI HAVGAHPVHE SLADAAPGVV DLWSLEERDA
RQQIEGWRAP FDAVSATSSE VKLARRIRNE VKTLIAQGTM TGHLGDRRPL RYGDILVLVR
RRGNAFDAII QALKQSGIPV AGADRLKLTE HIAIIDLMNL ADALLLPRDD LALAVALKSP
LFGLDDDDLF AIAHNRKGSL RDALADHATA NDKFRDAFER LKMCETRAAH ESPFAFYAWL
LGGDGGRRRI LRRLGHEAND ALDEFLELAL TYERKAPASQ QGFMAWLRAA DTDVKRDMEI
SRDEVRVMTV HGAKGLEASV VFLADTVTSP ADTERLNLIR MSRGNAPAHA AGVTVWAGRK
AEDPPDVVNA RAAMIAETEH EYRRLLYVAM TRAADRLIVG GCKPGNRKDV REHAWYDLID
KGLGKSGLAM REIETAAGTV KRFTRPGETE PDAAGPATPV AAAPIALPPW LHSMAAPEAP
AGPSLRPSDA DDNAHHRIWP GESPDQRRRA LLRGTLVHRL LQSLPDVPVD RRGDTALAYL
GRNARDWSEA ERDALAAQVL ALIGDSQFAP VFTDGSRAEV AIAGRLTTRR GDPVLVSGQI
DRLVVTREAV LIVDFKTNHA PPRNPADAPP AYVRQLALYR AVLARLYPEL PVKAALLWTE
TPEMMEISAL ALDAGLEAII SM