| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_2178 |
|---|
| Symbol | |
|---|
| ID | 9246028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | + |
|---|
| Start bp | 2601899 |
|---|
| End bp | 2603074 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | |
|---|
| Product | Uroporphyrinogen III synthase HEM4 |
|---|
| Protein accession | YP_003680106 |
|---|
| Protein GI | 297561132 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000567169 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000562153 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAACACCT CCCTGGACGA CGACACCGCG GCCCCGCCCG CCCACCGCCC GGCCGAACCC
GCCACCACCG CGCCGCTGGC CGGGTTCACC GTCGCCGTCA CCGCCGCCCG CCGCGCCGAG
GAGATCAGCG CCCTGCTGCG CCGCAAGGGC GCCCAGGTCC TGGCCGCACC GGCCCTGCGC
ATCGTGCCGC TCAGCGACGA CCAGCGCCTG GCCTCGGTCT CCGAACAGCT CGCCCGCCGC
CCCGCCGACG TCGTCGTGGC CACCACCGGC ATCGGCTTCC GCGGCTGGGT GGAGGCGTGC
GAGACCTGGG GCACCGTCGA CCCGCTCCTG GCGAGCCTGC GCACCTCGCG CCTGCTGGCC
CGCGGCCCCA AGGCCAAGGG CGCCATCCGC GCCGCCGGAC TCACCGAGGA GTGGTCGCCG
CCCTCGGAGT CCTCCGCCGA GGTCCTGGAC TACCTGCTCG CCCGGGGCGT GCGGGGTCTG
CGCGTGGCCA TCCAGCTGCA CGGCGAACCC CTGCCCGACT TCACCGCCGC CCTGCGCCTG
GCCGGAGCCG ACGTCGTCGA GGTCCCCGTC TACCGCTGGA CCCTGCCCGA GGACACCGCG
CCCCTGGACC GCCTCATCGA GGCCGTCACC AACGGGGGAG TGGACGCGGT CACCTTCACC
AGCGCCCCGG CCGCGGCGGG GCTGCTGGCC CGCGCCCACA CCACCGGCCA CCAGGCCGCC
CTGGTCCGGG CCCTGCGCGG CGACGTCCTG GCCATGTGCG TGGGAGCGGT CACCGCACGC
CCCCTCATGG CCCACGACAT CCCCACCGTG TGGCCCCAGC GCGCCCGCGT CGGCGCCCAG
GTCCGCGCGC TCGCCGAGGA GCTGCCCGCA CGCTTTCCGA CCCTGTCCGT GGCCGGACAC
CGCCTGCGCC TGCGCGGCCA CGCCGTCCTG GTCGACGGCA CCGTGCGCAC CCTCTCGCCC
ACCCTGATGC GGGTGCTGCG CGAGCTGGCG CGCAGGCCCG GCCAGGTCCT GGACCGCACC
CGCCTGCTCA CCTGCCTGGG CGAGGACGCC GACGCCCACG CCGTGGAGAC GGCCGTGGCC
CGGCTGCGCA CCGCGCTGGG CGACCCCCGC ATCATCCAGA CCGTGGTCAA ACGCGGCTAC
CGGCTGGCCC TGGACCCGGC CGAACGCACC CTCTGA
|
|---|
| Protein sequence | MNTSLDDDTA APPAHRPAEP ATTAPLAGFT VAVTAARRAE EISALLRRKG AQVLAAPALR
IVPLSDDQRL ASVSEQLARR PADVVVATTG IGFRGWVEAC ETWGTVDPLL ASLRTSRLLA
RGPKAKGAIR AAGLTEEWSP PSESSAEVLD YLLARGVRGL RVAIQLHGEP LPDFTAALRL
AGADVVEVPV YRWTLPEDTA PLDRLIEAVT NGGVDAVTFT SAPAAAGLLA RAHTTGHQAA
LVRALRGDVL AMCVGAVTAR PLMAHDIPTV WPQRARVGAQ VRALAEELPA RFPTLSVAGH
RLRLRGHAVL VDGTVRTLSP TLMRVLRELA RRPGQVLDRT RLLTCLGEDA DAHAVETAVA
RLRTALGDPR IIQTVVKRGY RLALDPAERT L
|
|---|
| |