| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_0057 |
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| Symbol | |
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| ID | 4270335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008340 |
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| Strand | + |
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| Start bp | 61425 |
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| End bp | 65042 |
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| Gene Length | 3618 bp |
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| Protein Length | 1205 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638124782 |
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| Product | ImcF domain-containing protein |
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| Protein accession | YP_740904 |
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| Protein GI | 114319221 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGACA AGGCAAGGAA TCGCGTGGCA GGACGCCTGC GCGGCACCAT GGGCAGCGTA
ACGGGAGGGC GGGTCAGCCG CTATTCGGGG TGGGTGGGCG CGCTCCGTCG CGGGTGGCCC
TGGGTCGTGG GGCTGCTGGG GATAGCATTG CTGGCGGTGG TCTGGATCTG GGGGCCGGCC
TGGCAGATCG GTGGCGCCCG GCCCCTGGCC CCCTGGCCGA ACCGGCTGCT GGTCATTCTC
TGCGCGGTGC TGGTCGTGCT GGTGATTATT GGGCTCCGCC TCAGGGCCCG CCTGCGCGAT
GCCGAACCCC CCCGCGACGA GGCTGAGATC CCCGACCCGG TGGCCCAGGC AACCGCCGGG
CAGGAGCAGG GCCTGAATCA TTGCTTGGAC CAGTTGCGGC GCCAGCGCGG GCGCCACGCC
CTGCAGGCAT TGCCCTGGTA CCTCGTGCTG GGTCCGGAGG GCAGCGGCAA GACCAGTCTG
GTGCAGCGCT CGGGCCAGCG CTTTTCACTC ACCCGGAGCC TCCACCCGCA GGGCGGTGAG
GCCTCGGATA GCGGGCTGCG CTGCTGGGCC AGTGACCGGG CCGTCACGCT GGAGCCCGGC
GCCGCCTGGC TGTTGCAAGG GGGGTGGGAC AGAGACGGTG CGGATGCCCT GAGCGCCTCC
CTCTGGCAGC ACCTGGTCGG CTGGCTGCAG CGGCGTCGCC CCCGACGGCC GCTCGACGGC
GTGCTCCTGG TGCTGGACCT GTCCCGGCTC ACCAGCGCCG GCGCCCGGGA CGACTGGGGC
GATGCCCTGC GCGAACGCCT GCAGGAGCTG ACCACGACCT ATCAGAGCCG GCTTCCGGTC
TACGTGGTCT TCAGCCAGAT GGATCGGTTG TACGGCTTTG ACGCCTTCTT CCGGCACGCT
GTCGGTGATG CCCGCTGCGA GCCATGGGGC TTCTCCTTCA GCGCCGGCAG CCTGGCCGAC
CCGGACGCCT GGGAGGAGGA GTTCACCGGC GCCTACCGAC GCATGCTCGG CCGCATCGAA
CGGCAACTGG TCGCATGGCT GGCCGCGTGT CGTGATCAGG GCGAACGGGA GGCCCTTTTC
CGCTTCTCCC GACAGCTGGC CGGTCTCGAG CCCCTCCTGA GCGAAACCCT GCAACGGGTG
CTCGGCAGCC GGCGTTATGC CGTTGAACCG CTGGTGCGCG GGGTGTACTT CGCCTCGCTC
GGCCAGCAGG GGGTGCCCAT CGATGCCTTT GCCGACGCGG CCACCGCCCG CTATCGCCTG
CCCGACCTGG TGCACCGTGC CCGCCGCAAT GGCCAGCAGT CGCTGGCCTG GTTCTCGGAG
CGGTTGCTGC AGCGGGTGGT CTTCCCCGAG GCCGGCCTTG CCGGGGACAG CCTCCGCTTC
GTCCGCCGCC GGCGTTGGCT GCGCGGTGCC GGCCTGGTGT TCTCCCTGGC AGGGCTGAGC
GGATTGGTCA TCGGCTGGGG GCACTACTAT CAGCACAATC TCGTGGCCCT GCAGGCCGTG
GAGGCGAGGG CGGAGGCCCT GGCGGACCTG CGACCGGCGC AGGAGCACCT CGACGACCCC
AGCGGCCAGC ACCTGGTGCC GGCGCTGGAT GAGCTCCGCG AGGTCGCCGG CGTCTTTGAC
GGACCCCGCG GGGCGTGGGC AGGCCTGGCG GATATGGGGC TCTACCAGGG GCACAGGGTC
GGTGATGCCA TGGACCAGGC GTACCTGGAC GCGCTCCGCT ACCGGTTCCT GCCGGCCCTG
ATGCTCGGCA TTGCCGACGA GATGAACACG CTGGCACCGG GGAGCGAGGA GCAGCTCGTC
CGGCTCCGCG TCCTGCGCAT GCTCGCCGAT GCCCGCGGAC GGGAACCGGA TCGGGTGCGG
GACTATATGG CCGATCGCTG GCAGGCGCTG TTGCCCAACC GGGGGCGGCT GCAGGGCCGG
CTGCTGGAGC ACCTGGACCA TGCCCTCGTC CATACCGACC TGGCGGGCCG GCAGGCGCAC
GATCCCCGCG CGGCGGCCGC GCTGGCGCCG GTGGCCGGCA GCATCCGGAA GGCCCAGCAG
GCGTTCTCCC GCAGTCCGGT GGATGAGCGG GTCTATACCC TCCTGAAGCG CCGCGGGCAG
GACCGAGCCG GTGGCGGCGT AAGGCTGGAC CGCAGCGTTG GGTCGGGTTG GGGCACGGTC
TTCCGCGCCG ATGACGATGA TCCGGACGGG GTGACCGTAT CGCCGCTGCT GACCCGTGAC
GGCTTTGAGC AGGTCTTTCT CGGAGAGTTG GACGGCGCCA CGGTCCTCGC CCTGAACGAC
CTCTGGGTGC TGGGCGAGCG GGACGACCCG CAGTTCAGCG AGCGCGACGA GCAGCGCTTG
CGGGAGGCCC TGCGTGAGCA GTATGTGGCC GACTTCCACG CCGGTTGGCG CCGAGCCCTG
GGTAACATCC ATCTCACCGA TCTGGAGAGT ATTCCCCACG CCGTGATCGT CATCGACGCG
CTGCTGGGGG GCGGCCGTCC GCTGGAACGC CTGCTGGCCG AGATCGAGCG CCACACCCGA
CTCTACCCCG AACTCCCGGT GGATGACGAC GTGGCCCGGG ACCGGCTCAG GGGCTCGTCG
CGCTACCGGC TGGCCGGGAA GCTGGCCGCG CCCTTCCAAC CCCTCCACGC CCTGCATCGG
AAGGGGGAGG AGGCGGACGG CGATCTGGCC GCCGTCCGGG CCGCACTGGG GGCATTGCGA
GACCATCTGC GGGCGGTGGA GCAGTCCAGC GAGCCGGGGC GCATCGCCTA CCGTCACGCC
CGCAACCGGC TACTGCAGGA CAGCGGGGAT CCGGTGGACC GGGTGGAGCG GCTGGCCGAA
GAGTTGCCTG CCCCGTTGGA TGGATTCATG GCGGGTATCG CCGAGCAGAG CTGGCGGCTG
ATCAGTGGTG AGGCCATCCG GTACCTGGAG CAGCAGTGGC TGGACGAGGT GATTGCCCCG
TTTGAGGCGG ATCTGGCCGG CCGTTACCCG CTGGAACCGA ACGCCCGGCG GGAGGTGGCG
CTGGAGGACT TCGAGCGCTT CTTTGCGGCG GGCGGCACCC TGGACAGCTT CTTCATGGAC
AAACTGCAGC CCTTCCTCGA CGAGGCCCCG GAACTGCTGG AGGGGCCCGA CGGGCGTTCG
CTGCTCAATC CCCGGTTGCG GACGGCGCTG GAGCGGGCGG AGCGGATCCG GGAGGCCTAC
TTTGGCCGGG ACGGGCTGCT GGATGTCGGT TTCACCCTGG CCCCGGTGAG CCTCAGCGGT
GACAAGCGGC GTAGCGTGCT CAACGTGGAC GGGCAGATTC TGGAGTATCG CCACGGCGCC
CCCCAGCGGG TCGCCATGCT CTGGCCCAAC AGCCTGCGTC AGACCAATGA AAGCGGGATC
ACGCTGGTAC CCGACCGCGT CAACCGTTCG CCGCGCAGCG AACGCCACCA GGGGGCCTGG
GCCTGGTTCC GCCTGCTCGA CGAAGCCCGT GTGGTGGCGG TGGGCGAGCG GGAGCTGCGG
CTCAGCTTCC AGGTGGATGG CGGGGAGATG AGCTACCGCC TGACCGCGGA CCGGACCCGC
AATCCGTTCA CCCGGCCGCT GACCCGGGGG TACACGGTGC CTGCCACCCT GTACCGCAAC
GGGGTCGGCG GACGCTGA
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| Protein sequence | MSDKARNRVA GRLRGTMGSV TGGRVSRYSG WVGALRRGWP WVVGLLGIAL LAVVWIWGPA
WQIGGARPLA PWPNRLLVIL CAVLVVLVII GLRLRARLRD AEPPRDEAEI PDPVAQATAG
QEQGLNHCLD QLRRQRGRHA LQALPWYLVL GPEGSGKTSL VQRSGQRFSL TRSLHPQGGE
ASDSGLRCWA SDRAVTLEPG AAWLLQGGWD RDGADALSAS LWQHLVGWLQ RRRPRRPLDG
VLLVLDLSRL TSAGARDDWG DALRERLQEL TTTYQSRLPV YVVFSQMDRL YGFDAFFRHA
VGDARCEPWG FSFSAGSLAD PDAWEEEFTG AYRRMLGRIE RQLVAWLAAC RDQGEREALF
RFSRQLAGLE PLLSETLQRV LGSRRYAVEP LVRGVYFASL GQQGVPIDAF ADAATARYRL
PDLVHRARRN GQQSLAWFSE RLLQRVVFPE AGLAGDSLRF VRRRRWLRGA GLVFSLAGLS
GLVIGWGHYY QHNLVALQAV EARAEALADL RPAQEHLDDP SGQHLVPALD ELREVAGVFD
GPRGAWAGLA DMGLYQGHRV GDAMDQAYLD ALRYRFLPAL MLGIADEMNT LAPGSEEQLV
RLRVLRMLAD ARGREPDRVR DYMADRWQAL LPNRGRLQGR LLEHLDHALV HTDLAGRQAH
DPRAAAALAP VAGSIRKAQQ AFSRSPVDER VYTLLKRRGQ DRAGGGVRLD RSVGSGWGTV
FRADDDDPDG VTVSPLLTRD GFEQVFLGEL DGATVLALND LWVLGERDDP QFSERDEQRL
REALREQYVA DFHAGWRRAL GNIHLTDLES IPHAVIVIDA LLGGGRPLER LLAEIERHTR
LYPELPVDDD VARDRLRGSS RYRLAGKLAA PFQPLHALHR KGEEADGDLA AVRAALGALR
DHLRAVEQSS EPGRIAYRHA RNRLLQDSGD PVDRVERLAE ELPAPLDGFM AGIAEQSWRL
ISGEAIRYLE QQWLDEVIAP FEADLAGRYP LEPNARREVA LEDFERFFAA GGTLDSFFMD
KLQPFLDEAP ELLEGPDGRS LLNPRLRTAL ERAERIREAY FGRDGLLDVG FTLAPVSLSG
DKRRSVLNVD GQILEYRHGA PQRVAMLWPN SLRQTNESGI TLVPDRVNRS PRSERHQGAW
AWFRLLDEAR VVAVGERELR LSFQVDGGEM SYRLTADRTR NPFTRPLTRG YTVPATLYRN
GVGGR
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