| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_0031 |
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| Symbol | |
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| ID | 5832928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 32325 |
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| End bp | 34709 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641365815 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001637530 |
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| Protein GI | 163849487 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.412275 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATTC GTGCACATGT CCTCGCGCTG ACGTTCGGGC TGGCTCTCGG CCCATCCGGC
GCAGCCTTCG CCGCCGAGCC GTTGCCGGGG CTCGGCTACG GCCCGCGGCC CTCGGGTGGA
TTCATCCTTC GCGGGAACGA CCGGTTCATC GCCGGGGAGG CTCCCGCCGC GCAGGCGCTC
CCCGGCGGCC TCGTCAGCCT CAACCTCGTC GAGGCCCCGC TGCCGAATGC CGCCAAGGCG
GTGCTCGCCG ACACGCTGGG CCTCGGCTAC ACCCTCGATC CGCAGGCCAC CGGCACCGTC
ACGCTCCAGA CCGGCGGTGC GGTCACCCGC GAGGCGCTGC TGCAGATGTT CGAGGCGGCA
CTCGCGAGCC GCGGTCTCGT GCTGCGCCGC CGCGGACGCA TCGCCCAGAT CGCCCCCGCC
GCCACCGACC CGAACGCCGT GCGCGCGGTG CGCGGCCCGG CCGCGGAAGC CGGCGCTGTC
GCCATGCCCC TGCGCTGGGT CTCGGCGGTC GAAATGCAGG CGATCCTGAC GTCGGTCGCA
CCCCGCGACG TGGTGCTGCG GGCCGACCGG GCGCGCAATC TCCTGATCCT CAACGGCGAC
GCGACCCAAA TCCGCGCCCT GCGCCAGACC ATCGCGATGT TCGACGTCGA TTGGATGCGC
GGCATGTCCA CGGCGATGCT GCCGGTGCGC AGCGCCAGCC CCGTCACGCT CGCCCGCGAC
ATGACGCAGA TGTTCGGGGG CGAGGCCGCC GGCACCGGGG ACGTGATCCG CTTCATCCCC
AACGAGGCGC TGAGCGCCAT CCTCGTGGTG AGCTCGCGCG CCGTCTATCT CGACCGCGCC
CGCGTGATGC TGGAGCAGAT GGAGGTGCTC GCCGCCGAGC GCGAGCGCCA GCTCTTCGTC
TACCGCATCC AGAATCGCTC GGCCCGGGAA CTCGCGGCGG TGCTCCAGGG TGTGGTCGCG
GCGGAAACCG GCGCCCCCGT GAACGTCTCG TCGGGCTCCG GCGCCGCGCA GGCTGGCTTC
GGCGGCGGCT TCGCCCAGAG CGCGGGCGCA ATGCCGGGCG GATTTGCACC CGGATATGGC
GGCCCCGGCG GCTCGGGATA TGGCGGCTCC AGCGGCTCGG CGGGGCTGTC CGGTGTGGGC
GCGCCTTACG GCGCCGGCTA CGGGACCGAG ACAGCGACGG GCGGTGCCGG AGGCACGGGT
GCTTACGGAA GCACCGGGTC CATGCCCGGC ACGGGATCCG CGGGGGGCAT GTCCCCCATG
GGCGGCGCCG GCATGGACGG GACCGGGGGC CTGCCCGCCG CGTACGGCGC CGCGCCGGTC
GCCTACGGTG GCGGCTACGG TGCCGAGACG GGCATGGCGG GGGGGTATGG CGGGGCCTAC
GGCGCTCGCC GCGACGCCAT CGGCGTCGTC GCCGACGAGG CCAACAACAG CCTCGTGATC
TCGGCCACCC GCAACCAGTA CGACAAGATC CTGCGCATCC TCGGCCGGCT CGACGCGATG
CCGACGCAGG TTCTGCTCGA GACCGTGATC GCGGAGGTGA CGCTCAACAA CGAGCTTCAG
TTCGGCGTGC AGTGGTTCCT CAAGAACAGT GGTTCGCGCT TTAACCTGGC CCAGGCGGAC
ACCAACCGCA GCGTCGCCCA GGGCACGAGC GGCACGGACG CGCTGATCAA GGCCGCCGCG
CGGGGCGTGC CGGGCTTCAA CTACCTGCTC AACGCCTCCG ACTTCAACGT CGTGCTCAAC
GCCCTGCAGG GCGTGACGCG GGTCAACGTC ATCTCCTCGC CCAACATCAC CGTGCTCGAC
AACCGAACCG CCAAGCTCCA GGTCGGCGAT CAGGTGCCAA TCGTGCGCCA AAGCGGCCAG
AGCGCGTTCG CGGCGGGTGC GCCGATCCTC AATCAGATCG AGATGAAGGA TACCGGCGTG
ATCCTGTCGG TGACGCCGCG GGTGAACAAG AACGGCCTCG TGGTGCTCGA CATCAATCAA
GAGGTCAGCG ACGTCGTGAA GACCACGACC TCGGAGATCA ACTCGCCGAC CATCCGTCAG
CGCCGGGTTG CGACCAGCGT GGCGGTGAAT GACGGCCACA GCCTCGCCAT CGGCGGCATG
GTGCAGGAGA AGGCGCAGAT CACCAACGAG AGCGTGCCCC TCCTGGGCGA TTTGCCGATC
GTCGGACCCG CCTTCCGCAA CCGCATCGAC GGGCGCGTGC GCACGGAGCT GATCGTGTTC
ATCCGGCCGA AGGTGATCCG CGGCACCGTC GAGGCCGACC GCATCGCCGA GGATTTCCGC
CAGCAATTCC GGGCGATGAT GCCGATCCGC CCGGTGCCGG CGCCCCTGCC GATGGCCGCC
ATGCCGATCG GGCCGGACGG CGTGCTGCGC CGGATGATCG ACTGA
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| Protein sequence | MAIRAHVLAL TFGLALGPSG AAFAAEPLPG LGYGPRPSGG FILRGNDRFI AGEAPAAQAL
PGGLVSLNLV EAPLPNAAKA VLADTLGLGY TLDPQATGTV TLQTGGAVTR EALLQMFEAA
LASRGLVLRR RGRIAQIAPA ATDPNAVRAV RGPAAEAGAV AMPLRWVSAV EMQAILTSVA
PRDVVLRADR ARNLLILNGD ATQIRALRQT IAMFDVDWMR GMSTAMLPVR SASPVTLARD
MTQMFGGEAA GTGDVIRFIP NEALSAILVV SSRAVYLDRA RVMLEQMEVL AAERERQLFV
YRIQNRSARE LAAVLQGVVA AETGAPVNVS SGSGAAQAGF GGGFAQSAGA MPGGFAPGYG
GPGGSGYGGS SGSAGLSGVG APYGAGYGTE TATGGAGGTG AYGSTGSMPG TGSAGGMSPM
GGAGMDGTGG LPAAYGAAPV AYGGGYGAET GMAGGYGGAY GARRDAIGVV ADEANNSLVI
SATRNQYDKI LRILGRLDAM PTQVLLETVI AEVTLNNELQ FGVQWFLKNS GSRFNLAQAD
TNRSVAQGTS GTDALIKAAA RGVPGFNYLL NASDFNVVLN ALQGVTRVNV ISSPNITVLD
NRTAKLQVGD QVPIVRQSGQ SAFAAGAPIL NQIEMKDTGV ILSVTPRVNK NGLVVLDINQ
EVSDVVKTTT SEINSPTIRQ RRVATSVAVN DGHSLAIGGM VQEKAQITNE SVPLLGDLPI
VGPAFRNRID GRVRTELIVF IRPKVIRGTV EADRIAEDFR QQFRAMMPIR PVPAPLPMAA
MPIGPDGVLR RMID
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