Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1842 |
Symbol | |
ID | 6877826 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1822357 |
End bp | 1823907 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642789711 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_002220270 |
Protein GI | 198283949 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGTGG AAAGCGCCGC GCTCCCTCGG GAAGGATTGA ACCGGCCTCT CATCACCCTG TCCATCATGT TGGCCACCAT CATGCAGACC CTGGACAGCA CCATCGCCAA TGTGGCACTG CCCCACATGC GGGGCAGCCT GTCCGCGTCC CTGGACCAGA TCGGCTGGGT GCTGACCTCT TACATCGTGG CGGCGGCCAT CGCCACACCG CTGACCGGCT GGCTCTGTGA CCGTTTCGGC CAGCGTCATG TTTTTCTGGC TTCGGTGCTG GGGTTTACAC TGGCCTCCAT GTGGTGCGGC ATTTCCACCT CGCTGGGGGA AATTGTCGTG GCGCGGGCGT TGCAGGGTGT CTTCGGGGCG GCGCTCGTGC CGCTTTCGCA AACCGTCCTG CTCGACATCA ATCCCCGGGA AAAGCAGGGT TCCGCCATGG CCCTGTGGGG CATGGGGGTG ATGGTGGGGC CGATCATCGG GCCGACGCTG GGCGGTTGGC TGACGGATAC CATGGGCTGG CGTTGGGTGT TTTTCATTAA CGTGCCGGTG GGGATCATAG CGTTTACAGG AATCTGGAGG AGCTTCCCCA GGGATGCCGC GCTGCGGCGG ATGCACTTTG ATATGGCCGG GTTTATCAGT CTGAGTCTGG CTGTCGGGGC CCTGCAGTTG TTCCTGGATC GCGGACAACA GCAGAACTGG TTCGCTTCGG TGGAAATCTG GGTAGAAGTC TATATTGCGG GGTTGGCATC GCTGTATTTC CTCTATCATA CCTGGCGCAC ACCGGTTGAC CGTTCCTTCT TCGATTACCG GCTGATCCTC AACCGCAACT ATGTCACCGG TCTGCTTTTC ATCTTTATCG TCGGACTGGT GCTCTTTGCA TCGCGGGCGC TGATCCCCAC CATGCTGCAG GATCTGATGG GCTACACCGC GGCGGCGGCA GGTTGGGTGA CGGCACCGAG CGGCCTGGGC ACCATGTTCG CCATGCTGAT CGTCGGGCGA CTGGTGGGCA AGGTGGATCT GCGGCTGCTG CTCGCCATCG GTTTCGGGAT CACGGCCTTT TCCCTCTGGC AGATGCAGGG CTATAGTCTG GTGATCGGTG AGGGTGATGT GATCTGGCCG GGGGTCTGGC AGGGGCTGGG GATGGGTCTG GTTTTTGTGC CCTTGAGTAC CGCCACCTTT GCAACCCTGA GCCCGGAAAT GCGGGCCAAC GGCACCGCAA TCTACAGTCT GGTGCGTAAT GTCGGCAGCA GCATCGGGAT TTCTCTGGTG GAGACCTTGC TCACCCGCAA TACGCAGATT TCCCACGCGG CGCTGAGCAC CCACATCGAT GACAGTAATC CGGCTTTTCA GAACCCGGCG GTAGCCAGCC TTTATAATCC CCATGACGCC ATGGGCCAGC TTCTGCTGAA TACGGAAATC ACCCGGCAGG CGACGATGAT CGCATATATT GATGATTTCT GGCTGATGCT GGTGATGACG CTGGCGGTTT TTCCGCTGCT GCTGATCATT CGCCCGCCCA AGCGAGGCGA GGTGGTGAAA CAGGAGATGA TTGTGGATTA G
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Protein sequence | MIVESAALPR EGLNRPLITL SIMLATIMQT LDSTIANVAL PHMRGSLSAS LDQIGWVLTS YIVAAAIATP LTGWLCDRFG QRHVFLASVL GFTLASMWCG ISTSLGEIVV ARALQGVFGA ALVPLSQTVL LDINPREKQG SAMALWGMGV MVGPIIGPTL GGWLTDTMGW RWVFFINVPV GIIAFTGIWR SFPRDAALRR MHFDMAGFIS LSLAVGALQL FLDRGQQQNW FASVEIWVEV YIAGLASLYF LYHTWRTPVD RSFFDYRLIL NRNYVTGLLF IFIVGLVLFA SRALIPTMLQ DLMGYTAAAA GWVTAPSGLG TMFAMLIVGR LVGKVDLRLL LAIGFGITAF SLWQMQGYSL VIGEGDVIWP GVWQGLGMGL VFVPLSTATF ATLSPEMRAN GTAIYSLVRN VGSSIGISLV ETLLTRNTQI SHAALSTHID DSNPAFQNPA VASLYNPHDA MGQLLLNTEI TRQATMIAYI DDFWLMLVMT LAVFPLLLII RPPKRGEVVK QEMIVD
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