Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_0004 |
Symbol | |
ID | 6875953 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 4042 |
End bp | 6447 |
Gene Length | 2406 bp |
Protein Length | 801 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642787883 |
Product | DNA gyrase, B subunit |
Protein accession | YP_002218473 |
Protein GI | 198282152 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0231697 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000608059 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATGATGG AAACATACGA TTCTTCCAGT ATCCAGGTGT TGAAAGGTCT GGAAGCGGTA CGCAAACGCC CCGGCATGTA TATCGGCGAT ACCGATGACG GCAGCGGACT GCATCACATG GTCTTCGAAG TAGTGGATAA CGCCATCGAT GAGGCGCTCG GCGGGTATTG CGATACCATC ATCGTGACCA TCCACGAGGA TGAATCCGTC AGCATCAGCG ACAACGGTCG TGGTATACCG GTGGACATGC ACGCCGGGGA GGGCCGATCC GCTGCCGAAG TCATCATGAC CGTGCTGCAT GCAGGTGGTA AGTTCGATGA CAACGCCTAC AAGGTTTCCG GCGGCTTGCA CGGGGTTGGT GTCTCGGTGG TCAACGCCCT TTCGGAAACT CTGCAATTGC GCATCTTCCG TGACGGTTAT GTCTGGACCC AGGAGTATCA CGATGGCGAA CCCCAGGCAC CCATCGCCCG CGGCGATGCA TCACGCAAAC ATGGCAGTAC CATCCGCTTC AAACCCTCGC CCCAGGTTTT TGCCGATACC CATTTTCACT TCGAGATCAT CGCGAAGCGC TTGCGCGAAC TGGCCTTTCT CAATTCCGGC GTGCATATCA CCCTGCTGGA TGAGCGGGCC AGCCGGGAGG AAACCTTTCA TTATGAAGGC GGTATTCGCG CTTTCGTAGA GCATCTCAAC CGCAGCAAAA CCGCCATTCA TCCCAGTGTG ATCACTCTCA CCGGCGAGCG CGACGGCATT GTCGTCGAAG CGGCCCTGCA GTGGAACGAA GGCTATAACG AGGCGGTGCT CTGCTTCACC AACAATATTC CCCAGGCCGA TGGCGGCACC CATTTGGCGG GCTTTCGCGG TGCCCTGACC CGTACCTTGA ACCAGTATAT GGAACGGGAA GGCATCATCG CCAAGGCCAA GGTTGCGGTG AGTGGCGAGG ATGCACGCGA AGGATTGACA GCGGTGCTTT CCGTCAAGGT ACCGGACCCC AAATTTTCTT CGCAGACCAA GGAAAAACTG GTCTCCAGCG AGGTCAAACC GATAGTCGAG TCCTCCATGT CCGAGGCGCT GACCATGTTT CTGGATGAGC ATCCCAAAGA GGCGCAGGCC ATCGCCGCCA AGATCGTCGA AGCGGCGCGG GCGCGGGAAG CCGCCCGGCG GGCACGGGAA CTGACCCGCC GCAAGGGGGC GCTGGACATT GCCAACCTTC CCGGCAAGCT GGCCGACTGT CAGGAGAAAG ATCCGGCCCA GTGTGAAATC TATCTGGTGG AGGGCGATTC CGCAGGCGGC TCTGCCAAAC AGGGCCGGGA TCGCCGGCAT CAGGCCATCC TTCCCCTGAA GGGCAAAATC CTCAATGTGG AACGGGCGCG TTTCGACCGG ATGCTTTCGT CCGACGAAAT TGGCACCCTG ATTACCGCGC TGGGTACCGG TATCGGTGCC GGGGATTTTG ATGTGGCTAA GCTGCGTTAT CACCGGGTCA TCATCATGAC GGACGCGGAC GTGGACGGCA GCCACATCCG CACCCTGTTG CTGACCTTTT TCTATCGGCA GATGCCCGAT CTCGTGGCAC GCGGCCATAT TTACATCGCC CAGCCGCCCC TCTACAAGGT CAAGAAGGGC AAGGAGGAAC GCTACCTCAA GGATGACGGC GAACTGGCCG CCTATCTGCG TGAAATTGCC ATGCAGGGCG CGCAATTCCG TCCCGCGGCG GATGCCGAGC CGGTAACGGA TGAGCAACTG GGCGGCATGA TGCGTCAATA CCAGAACATC GAGGCACTGG TGCAGCGTCT GGAACGGCGT TATCCCAGTA CTCTGCTCTG GGCCTTGGCC ACCTTGCCAC CCATCGTTGC GGAGTCGGCG GATAGCGCCA CCTGGGACGA TTTTGCGCGG CAGCTCCGCG CGGCACTGGA AGTGAATGCC CTGCCCGCCG AACATTACAC GGTGGAGCGG GTGGGTGAAG CGGAGGCCTT GCGCCTGGTG GTGCGCCGCG AACATCATGG CAGCGTGGAA CTGCGTTTCT TCGATCAGGA TTTTTTTGCC GGGGGCGAAT ATCGACATCT GGCGGATTAT GCGCGGCAGA TCGAGGGCAA AATCGGCGTG GGAGCGCGTA TGGAAAGGGG CGAACGAGGG CTTGCCGTCA GCCGTTTCCG CACCGCCATG GACTGGCTTC TGGCGGATGC CCGCCGTGGC GTCGAGATTC AGCGCTACAA GGGACTCGGT GAAATGAATC CGGAACAGCT CTGGGAAACC ACCATGAATG CCGCAAACCG CCGTCTGGTG CGGGTGGATG TGGAAGACGC CATCGCCGCC GACGAGGTCT TTTCCATGCT CATGGGCGAC GCGGTGGAAC CGCGTCGGCG CTTTATCGAG GAGAATGCGC GTTTTGTATC CAGACTCGAT ATCTGA
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Protein sequence | MMMETYDSSS IQVLKGLEAV RKRPGMYIGD TDDGSGLHHM VFEVVDNAID EALGGYCDTI IVTIHEDESV SISDNGRGIP VDMHAGEGRS AAEVIMTVLH AGGKFDDNAY KVSGGLHGVG VSVVNALSET LQLRIFRDGY VWTQEYHDGE PQAPIARGDA SRKHGSTIRF KPSPQVFADT HFHFEIIAKR LRELAFLNSG VHITLLDERA SREETFHYEG GIRAFVEHLN RSKTAIHPSV ITLTGERDGI VVEAALQWNE GYNEAVLCFT NNIPQADGGT HLAGFRGALT RTLNQYMERE GIIAKAKVAV SGEDAREGLT AVLSVKVPDP KFSSQTKEKL VSSEVKPIVE SSMSEALTMF LDEHPKEAQA IAAKIVEAAR AREAARRARE LTRRKGALDI ANLPGKLADC QEKDPAQCEI YLVEGDSAGG SAKQGRDRRH QAILPLKGKI LNVERARFDR MLSSDEIGTL ITALGTGIGA GDFDVAKLRY HRVIIMTDAD VDGSHIRTLL LTFFYRQMPD LVARGHIYIA QPPLYKVKKG KEERYLKDDG ELAAYLREIA MQGAQFRPAA DAEPVTDEQL GGMMRQYQNI EALVQRLERR YPSTLLWALA TLPPIVAESA DSATWDDFAR QLRAALEVNA LPAEHYTVER VGEAEALRLV VRREHHGSVE LRFFDQDFFA GGEYRHLADY ARQIEGKIGV GARMERGERG LAVSRFRTAM DWLLADARRG VEIQRYKGLG EMNPEQLWET TMNAANRRLV RVDVEDAIAA DEVFSMLMGD AVEPRRRFIE ENARFVSRLD I
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