Gene Lcho_4039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4039 
Symbol 
ID6160546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4523758 
End bp4525941 
Gene Length2184 bp 
Protein Length727 aa 
Translation table11 
GC content72% 
IMG OID641666819 
Productcyanophycin synthetase 
Protein accessionYP_001793058 
Protein GI171060709 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes 
TIGRFAM ID[TIGR02068] cyanophycin synthetase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000502251 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCCTCA AAGAAGACAT CAAACTGCTG CGCATCAACT ACCTGCGCGG CCCCAACGTC 
TGGACCTACC GACCGGTGCT GGAAGTCTGG CTCGATCTCG GTGAGCTCGA AGACCATCCC
TCCCACCTGC TGCCCGGTTT CAACGACCGG CTGACGGCGA TGCTGCCGGC GCTGGTCGAG
CACCACTGCG GTGTCGGCGA GCGCGGCGGT TTCCTGCAGC GGCTGCAGGA AGGCACCTGG
ATGGGCCATG TGCTCGAGCA CGTGGTGATC GAGCTGCTCA ACCTGTCGGG CATGCCGACC
GGCTTCGGCC AGACCCGCAG CACCTCGCGG CGCGGCGTCT ACCGGATGGT GTTCCGGGCC
CGCGACGAGC AGGTCGCCCG CACCGCGCTG GCCAACGCGC ATGCGCTGCT GATGGCGGCG
ATCAACGACC AGCCGTTCGA CGTCGACGCC GCCGTCACGC AGGTGCGCGA GCGCATCGAC
GAGTGCTTCC TCGGCCCCAG CACCGCCTGC ATCGTCGCCG CGGCGACCGA TCGGCGCATC
CCGCACATCC GCCTCAACGA CGGCAACCTG GTGCAGCTCG GCTACGGCTC GGCGCAGCGC
CGCATCTGGA CCGCCGAGAC CGACCTCACC AGCGCCATCG CCGAGGGCAT CGCCGGCGAC
AAGGACCTGA CCAAGGCGCT GCTGCGCGCG GTCGGCGTGC CGGTGCCCGA AGGCCAGGTC
GCCGCCGACC CGGCCGCCGC CTGGGAGATC GCGCAGGACA TCGGCCTGCC GGTGGTGGTC
AAGCCGACCG ACGCCAACCA CGGCCGCGGC GTCAGCCTCG ACCTCGGCAA CCGGCAGGAC
GTCGAATCCG CCTGGGGCGT GGCGCGCGCC GAAGGCAGCG AGGTGATCGT CGAACGCTAC
GTGCGCGGCG ACGAGCACCG CGTGCTGGTC GTCGACGGAC AGGTGGTGGC CGCCGCCCGC
GGCGAAAGCC TGTGGATCAC CGGCGACGGC CACGGCAGCG TCGTGCAGCT GATCGACAGC
CAGCTCAACA TCGATCCGCG CCGCGGCGAC GCCGAGGAGT TCCCGCTCGA GACCATCCGC
CTCGACCGCG AGCCGGTGAT CCGCCTGCTG CTGGAGCGCC AGGGCCTCGA CGGCACGTCG
GTGCCGGAGG CCGGCCGGCG GATCCTGATC CAGCGCAACG GCAACGTCTC GATCGACTGC
ACCGACCAGG TGCACCCCGA GGTCGAACAC GCCGTCTCGC TGGCCGCGCG GGTGATCGGC
CTGGACATCG CCGGCGTCGA TCTGGTCTGC GAGGACATCT CGCGCCCGCT GCAGGAGCAG
GGCGGCGCGA TCGTCGAGGT CAACGCCGGC CCCGGCCTGC TGATGCACCT GAAGCCGGCC
GAAGGTACGC CGCGGCCGGT CGGCCAGGCG ATCGTCAACC ACCTGTTCGC CGAAGACGCT
TCGGGCCGCA TCCCGATCGT CGGCATCGCC GGCTCGGTCG ACACCCACCG CATCGCCCGC
CTGGTGGCGT GGCTGGTGCA CCTGAGCGGG CGCCACGTCG GCCTGGCCTG CGGCGACGGC
CTGTTCCTCG GCAACCGCCA GGTCGAGCGG CGCGACGGCG CCAACTGGTC GGCCGGCCAC
CGGCTGCTGA TCAACCGCGA GGTGCAGGCG GTGGTGCTCG AGAACGGTGC CGCCAGCATC
CTGCAGGACG GCCTGGCCTA CGACCGCTGC CAGGTCGGCG TGATCACCGA CCTCGGTGGC
GCCGAGGCCC TGGCCGCGCA CGACATCCAG ACCTCCGACC AGCTGGTGCG GGTGCTGCGA
ACGCAGATGG ACGTGGTGCT GTCGGACGGC GTGGGCGTGC TCAACGCCGC CGACGAACGC
ATCGCCGAAC TCGCCAGCCT GTGCGACGGC GAGGTGCTCC TCTACGCCGA CGACGGACAG
AACGCCGCGC TGCGCGAACA CCGCGGCGCG GGCGGGCGGG CGGTGTTCCT GCGTGACCGG
CGCCTGGTGC TGGCCACGGG CACCAGCGAG ACGCTCGGCC CGCCGCTGCA CAGCGGGCGC
CGGCGCGGCG CGGCGCTCAG CGCCGGCGTG CTGCTGGCCG CCGTCGCCAC CGCCTGGGGC
CTGGGCATCG CCCCCGAACT GATCGCCGCC GGCATCGAGA CCTTCGATCC CGACCTGGCC
ATGACCGCCC CCGGCCAGCA CTGA
 
Protein sequence
MSLKEDIKLL RINYLRGPNV WTYRPVLEVW LDLGELEDHP SHLLPGFNDR LTAMLPALVE 
HHCGVGERGG FLQRLQEGTW MGHVLEHVVI ELLNLSGMPT GFGQTRSTSR RGVYRMVFRA
RDEQVARTAL ANAHALLMAA INDQPFDVDA AVTQVRERID ECFLGPSTAC IVAAATDRRI
PHIRLNDGNL VQLGYGSAQR RIWTAETDLT SAIAEGIAGD KDLTKALLRA VGVPVPEGQV
AADPAAAWEI AQDIGLPVVV KPTDANHGRG VSLDLGNRQD VESAWGVARA EGSEVIVERY
VRGDEHRVLV VDGQVVAAAR GESLWITGDG HGSVVQLIDS QLNIDPRRGD AEEFPLETIR
LDREPVIRLL LERQGLDGTS VPEAGRRILI QRNGNVSIDC TDQVHPEVEH AVSLAARVIG
LDIAGVDLVC EDISRPLQEQ GGAIVEVNAG PGLLMHLKPA EGTPRPVGQA IVNHLFAEDA
SGRIPIVGIA GSVDTHRIAR LVAWLVHLSG RHVGLACGDG LFLGNRQVER RDGANWSAGH
RLLINREVQA VVLENGAASI LQDGLAYDRC QVGVITDLGG AEALAAHDIQ TSDQLVRVLR
TQMDVVLSDG VGVLNAADER IAELASLCDG EVLLYADDGQ NAALREHRGA GGRAVFLRDR
RLVLATGTSE TLGPPLHSGR RRGAALSAGV LLAAVATAWG LGIAPELIAA GIETFDPDLA
MTAPGQH