| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3713 |
|---|
| Symbol | |
|---|
| ID | 6162193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4153223 |
|---|
| End bp | 4156399 |
|---|
| Gene Length | 3177 bp |
|---|
| Protein Length | 1058 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641666486 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_001792732 |
|---|
| Protein GI | 171060383 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.135226 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCGC AATTCTTCAT CGACCGCCCG ATCTTCGCGT GGGTGATCGC GCTGTTCATC
CTGATCCTCG GCGGTGCGGC CATCACCAAG CTGCCGGTGG CGCAGTACCC GACGGTGGCG
CCGCCGTCGA TCGTCATCAA CACCGCCTAT CCGGGCGCCT CGGCGCAGGT GCTCGAAGAC
AGCGTGCTGG CCGTGATCGA GCAGGAGCTC AACGGCGCGC CGGGCCTGAT CTACATGGAG
TCGAGCGCCG ACGCCAACGG CAGCGGCCAG ATCACCGCCA CCTTCGAGCC CGGCACCGAC
GTGTCGATCG CGCAGATCGA GATCCAGAAC CGCCTGAGCC GCGCCACGCC GCGCCTGCCC
TCGTCGGTGG TGCAGCAGGG CGTGCGGGTC GACAAGGCGC GCGCGAACTT CCTGCTGTTC
GTGATGCTGA CGTCCAAGAA CCCGGCCTAC GACCCGGTCG CGCTGGGTGA CTACGCGGCG
CGCAACATCC AGCCCGAGCT GCTGCGGGTG CCCGGCGTGG GCCAGGCCCA GCTGTTCGGC
ACCGAGCGGG CGATGCGGAT CTGGATCGAC CCGGCCAAGC TGGTCGGCCT GGGCCTGACG
CCGGCCGACG TGAACGCCGC GATCCGGGCC CAGAACATCC AGGTCTCGGC CGGCAGCATC
GGCGGTCTGC CCAGCGTGGC GGCGCAGTCG ACCTACGCCA CCGTGACCGT CAGCGGCCAG
CTCGCCAGCG TGGCGCAGTT CGGCGAGATC CTGCTGCGCA GCAACGCCGA CGGCTCCAGC
GTGCGCCTGA AAGACGTCGC CCGCATCGAG CTGGGCGCGC AGACCTACGC CACCTCGGCC
CGCCTGAACG GCGTCACCGC CACCGGCATC GGCGTGCAGC TCGCGCCCAC CGGCAACGCG
CTGGCCACCG CCCAGGCGAT CAAGGCCCGC CTGGCCGAGC TGCAGCAGTT CATGCCCGAG
GGCGTGAGCT ACGACGTGCC CTACGACAGC TCGCGCTTCG TCAGCATCTC GATCGAGCAG
GTCGTCAAGA CGCTGATCGA GGCGATCGCG CTGGTGTTCC TGGTGATGTT CCTGTTCCTG
CAGAACTTCC GCTACACGCT GATCCCGACC ATCGTGGTGC CGGTGGCGCT GCTGGGCACC
TTCGCGGTGA TGCTGACGCT GGGTTTCTCG ATCAACGTGC TCACACTCTT CGGCATGGTG
CTGGCGATCG GCATCCTGGT CGACGACGCC ATCGTGGTGG TCGAGAACGT CGAGCGCATC
ATGGCCGAGG AGGGCCTCTC CCCGGTCGAG GCCACCCGCA AGGCGATGGG CCAGATCACC
GGCGCCATCA TCGGCATCAC GGTGGTGCTG GTCAGCGTGT TCGTGCCGAT GGCGTTCTTT
GCCGGTTCGG TGGGCAACAT CTACCGCCAG TTCTCGCTGT CGATGGTGGC GTCGATGCTG
TTCTCGGCGC TGATGGCGCT GACGCTCACG CCGGCGCTGT GCGCCACGCT GCTCAAGCCG
ATCGACCCGG GCCATCACGA GAAGAAGGGT TTCTTCGGCT GGTTCAACCG CGCCTTCAAG
CGCACCACGC ATGGCTACGA GGGGCTGGTG GCCCGCATCA TCCGCAAGGC CGGGCGCTAT
CTGGTGATCT ACGGCGTGGT GCTGGCGGCG GTGGGCTTCA TGTACACCCG GCTGCCGACC
TCCTTCCTGC CCAACGAGGA CGCCGGTTAC CTGATCGTCA ACGTGCAGCT GCCCCCGGGC
GCGGCGATCG AGCGCACCGA GGCGGTGATG GCGCAGGTCG AGGACTTCTT CCTGAAGCAG
CCCGAGGTCG CCAAGGTGGT GGGTGTGCTG GGCTTCAGCT TCTCGGGCGC CGGCCAGAAC
GCCGCGCTGG CCTTCGTGCC GCTCAAGGAC TGGAGCGAGC GCAAGGGGCA GGCGCAGTCG
GCGCAGGCGC TGGCCGGGCG GGCCTTCGGC GCGTTGATGG GCATCCGCGA TGCGTTCATC
TTCCCGCTCA GCCCGCCGCC GATCCCCGAG CTGGGCAATG CCACCGGCTT CACCTTCCGG
CTGCAGGACC GCACCGGCCA GGGCCGCGCC GCCCTGCTGG CCGCGCGCAA CCAGCTGCTG
GGCATGGCGA GCCAGAGCAA GGTGCTGGCC GGCGTGCGTC CGGACGGCCT GGAAGACGCG
CCGCAGCTGC AGCTCGACAT CGACCGCGAA CGCGCGGCCG CGATGGGCGT CGGCTTCGAC
AGCATCGCCA GCGTGCTCGG CACCTCGTTC GGTTCGGCCT ACATCAACGA CTTCCCGAAC
GCCGGCCGGC TGCAGCGGGT GGTGGTGCAG GCCGAGGCCA GCGCGCGCAT GCAGCCCGAG
GACCTGCTCA AGCTCTACGT GCCCAACAAC CGCGGCCAGC AGGTGCCGAT GTCGGCCTTC
GCCAGCACGC GCTGGGTGGT CGGCCCGATC CAGACGGTGC GCTACAACGG CTATCCGGCC
ATGAAGATCA GCGGCGACAC CGCCAAGGGC TACAGCACCG GCGACGCCAT GGCCGAGATG
GAAAGGCTCG CCGCCCAGCT GCCTCCGGGC TTCGGCTTCG AGTGGACCGG CCAGTCGCGC
GAGGAAAAGC TCTCGGGCTC GCAGGCCATG ATCCTGCTGG CGTTCTCGAT GCTGGCGGTG
TTCCTGTGCC TGGCCGCGCT GTACGAGAGC TGGAGCATCC CGGTGGCCGT GCTGCTGGTG
GTGCCGCTGG GCATCCTGGG GGCGCTGTCG GGCGTGTGGC TGCGCGACAT GCCCAACGAC
GTCTACTTCA AGGTCGGCCT GATCACCATC ATCGGCTTGT CCGCCAAGAA CGCGATCCTG
ATCATCGAGT TCGCCAAGGA CCTGCAGGCC GAAGGCAAGG GCCTGCTCGA AGCCACGCTC
GAAGCCTGCC ACCTGCGCTT TCGGCCGATC ATCATGACCT CGTTCGCCTT CATCCTCGGC
GTGCTGCCGC TGGCGATCGC CAGCGGTGCC GGCTCGGCCA GCCAGCGTGC CATCGGCACC
GGCGTGATGG GCGGCATGAT CACCGCCACG GTGCTGGCGG TGTTCCTGGT GCCGGTGTTC
TTCGTCGTCA TCCGGCGCCT GTTCCCGAGC ACCCACCTGA TGCATCTGGG CGGCACGATC
TCGTCGGCTG CCAACGATGC CGCGGCCGCC GAAGCGCTGG GCCGCACGGA GAAATGA
|
|---|
| Protein sequence | MNSQFFIDRP IFAWVIALFI LILGGAAITK LPVAQYPTVA PPSIVINTAY PGASAQVLED
SVLAVIEQEL NGAPGLIYME SSADANGSGQ ITATFEPGTD VSIAQIEIQN RLSRATPRLP
SSVVQQGVRV DKARANFLLF VMLTSKNPAY DPVALGDYAA RNIQPELLRV PGVGQAQLFG
TERAMRIWID PAKLVGLGLT PADVNAAIRA QNIQVSAGSI GGLPSVAAQS TYATVTVSGQ
LASVAQFGEI LLRSNADGSS VRLKDVARIE LGAQTYATSA RLNGVTATGI GVQLAPTGNA
LATAQAIKAR LAELQQFMPE GVSYDVPYDS SRFVSISIEQ VVKTLIEAIA LVFLVMFLFL
QNFRYTLIPT IVVPVALLGT FAVMLTLGFS INVLTLFGMV LAIGILVDDA IVVVENVERI
MAEEGLSPVE ATRKAMGQIT GAIIGITVVL VSVFVPMAFF AGSVGNIYRQ FSLSMVASML
FSALMALTLT PALCATLLKP IDPGHHEKKG FFGWFNRAFK RTTHGYEGLV ARIIRKAGRY
LVIYGVVLAA VGFMYTRLPT SFLPNEDAGY LIVNVQLPPG AAIERTEAVM AQVEDFFLKQ
PEVAKVVGVL GFSFSGAGQN AALAFVPLKD WSERKGQAQS AQALAGRAFG ALMGIRDAFI
FPLSPPPIPE LGNATGFTFR LQDRTGQGRA ALLAARNQLL GMASQSKVLA GVRPDGLEDA
PQLQLDIDRE RAAAMGVGFD SIASVLGTSF GSAYINDFPN AGRLQRVVVQ AEASARMQPE
DLLKLYVPNN RGQQVPMSAF ASTRWVVGPI QTVRYNGYPA MKISGDTAKG YSTGDAMAEM
ERLAAQLPPG FGFEWTGQSR EEKLSGSQAM ILLAFSMLAV FLCLAALYES WSIPVAVLLV
VPLGILGALS GVWLRDMPND VYFKVGLITI IGLSAKNAIL IIEFAKDLQA EGKGLLEATL
EACHLRFRPI IMTSFAFILG VLPLAIASGA GSASQRAIGT GVMGGMITAT VLAVFLVPVF
FVVIRRLFPS THLMHLGGTI SSAANDAAAA EALGRTEK
|
|---|
| |