| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1755 |
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| Symbol | |
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| ID | 6160320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1882406 |
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| End bp | 1884349 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664517 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001790787 |
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| Protein GI | 171058438 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0455441 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCCAAG CGGCGCAAGC GGTCGTCACG GGTGTCGAGC AGGAGCCACC GGCAGCCCCG
GCCCGGCCGG TGGTCGACCG CGCCCTGCTG ATCCAGGGCA TCGAGCTGCA GAACCAGGGT
CAGCTCGACC CGGCGCAGCG CATCTTCGAG CTCTACCTCG ACCACCATCC GGCTGATCCT
GCGGCGCTCT ATTCGCTGGC GGTGATCCTG CTCAAGCGAC CCGAGTCCGG CAAGGCGCGG
GCGCTGCTCG ACCGTGCCGT GCAACTGGCA CCGCACTTCG CGCCGCTGTG GTTCGCGCAC
GGCACCGCGC TGCAAGGCGC GGGCGAGCGC GAAGCGGCGT TGCAGAGCCT CGACCGCGCG
CTGGCCATCC AGCCCGACTA CACCGAGGTG CTGATCAACT CCGGCGTGCT GCTGCGCGAG
TTGCTGCGCC ACGCCGAGGC GCTGCAGCGT TTTCAGCGTG TGCTTGAGAT CAAGCCGCAG
CACGAGACCG CGCTGGCCAA CTGCGCCGTG CTGCTGACCG ATTTCAAGCG CAGCGAAGAG
GCCACCGCGA TGTTCGAGCG CCTGCTCGCC ATCAACCCCG ATTACGACTA CGGCCTGGGC
ATGCTCTGCT ACGAGCGCCT GCACCGCTGC GACTGGACCG ATTTCGACGC CAGCGCCGAC
GCCATCCTGG CCGGCGTGCG CGAGGGCCGG CGCAGCAGCA AGTCGCTTGC CGTGATGGCC
TTGAGCGACT CTGCCGCCGA CCACCAGACC TGCGCCCGCA CCTTTTCCGC GCACCGCTAT
CCGCCCAGCG CCCAGCCGCT GTGGCGCGGC GAGCGCTACC GGCACGACCG CATCCGCATC
GCCTACGTCT CGCCGGACCT GCGCGAGCAC CCGGTGGGCC ACCTGATGGC GGGCATCTTC
GAGCGCCACG ACAAGAACCG CTTCGAGACC ATCGCGATCT CGCTGGGCAT CGACGACGGC
AGCCGGCTGC GCTCGCGCAT GCTGGCGAGC TTCGACCACT TCATCGACGC GCGGCTGATG
GGTTCGCGCC AGATCGCCAG CAGGATGCGC GAGATGGAGG TCGACATCGC CATCGACCTG
GCCGGCTACA CCGCCGACTC GCGCAGCGAG ATCTTCGCCG AGCGGCCCGC GCCGGCGCAG
GTCAACTACC TCGGCTACCC CGGCACGCTG GGTAACGGCT ACATGGACTA CATCGTGGCC
GACCGCCACG TGATCCCGCC CGAACACCAG GGCTTCTACG ACGAGCGGGT GGTCTACCTG
CCCGACAACT ACCTGCCCGC CGCGTCGGGC GTGCAGATCG CCGAACGCAC GCCCAGCCGC
ACCGAATGCG GCCTGCCCGA GAGCGGGCTG GTGTTCTGCT CGTTCAACCA CGACTACAAG
ATCTCGCCGC ACATCTTCGC GGCCTGGATG CGCATCCTCG CCGCCACGCC GGGCAGCGTC
CTGTGGCTGA TGTCGCGCGG CGCCGCCTCG CAGCGCAACC TGCGCGCGGC CGCACAGGCG
CAGGGCGTGG CGCCCGAGCG GCTGGTATTT GCGCAGCGCG TGCCGCGGGT CGAAGACCAC
CTGGCGCGAT ACCGTCAGGC CGACCTGTTC CTGGACACCC ATCCCTACAA CGCCCACACC
ACCGCCGCCG ACGCGCTGCT GGCCGGCCTG CCGGTGCTGA CCTACAGCGG CAACGCCTTT
CCGGCACGCG TGGCCGGCAG CCTGCTGCAC GCGGCGGGCC TGCCCGATCT GGTCACGCAC
AGCCTGTCCG ACTACGAGGC GCTGGCCGTG CGCCTGGCGC AGCAGCCCGC GCTGCTGGCC
GACTGCAAGG CCCGGCTGGC GGCACAGCGC GAGCGCTGTG CGCTGCTCGA TGCCGACGGC
TTCACGCGCA ACCTCGAGGC GATCTACATC GCGATGTGGC GCAACAGCCA GCTCGGCGGT
GTGCGCGACG CGCTCGGTGC TTGA
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| Protein sequence | MVQAAQAVVT GVEQEPPAAP ARPVVDRALL IQGIELQNQG QLDPAQRIFE LYLDHHPADP
AALYSLAVIL LKRPESGKAR ALLDRAVQLA PHFAPLWFAH GTALQGAGER EAALQSLDRA
LAIQPDYTEV LINSGVLLRE LLRHAEALQR FQRVLEIKPQ HETALANCAV LLTDFKRSEE
ATAMFERLLA INPDYDYGLG MLCYERLHRC DWTDFDASAD AILAGVREGR RSSKSLAVMA
LSDSAADHQT CARTFSAHRY PPSAQPLWRG ERYRHDRIRI AYVSPDLREH PVGHLMAGIF
ERHDKNRFET IAISLGIDDG SRLRSRMLAS FDHFIDARLM GSRQIASRMR EMEVDIAIDL
AGYTADSRSE IFAERPAPAQ VNYLGYPGTL GNGYMDYIVA DRHVIPPEHQ GFYDERVVYL
PDNYLPAASG VQIAERTPSR TECGLPESGL VFCSFNHDYK ISPHIFAAWM RILAATPGSV
LWLMSRGAAS QRNLRAAAQA QGVAPERLVF AQRVPRVEDH LARYRQADLF LDTHPYNAHT
TAADALLAGL PVLTYSGNAF PARVAGSLLH AAGLPDLVTH SLSDYEALAV RLAQQPALLA
DCKARLAAQR ERCALLDADG FTRNLEAIYI AMWRNSQLGG VRDALGA
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