Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Krad_0646 |
Symbol | |
ID | 5337292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Kineococcus radiotolerans SRS30216 |
Kingdom | Bacteria |
Replicon accession | NC_009664 |
Strand | - |
Start bp | 1632547 |
End bp | 1634214 |
Gene Length | 1668 bp |
Protein Length | 555 aa |
Translation table | 11 |
GC content | 80% |
IMG OID | |
Product | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase |
Protein accession | YP_001360399 |
Protein GI | 152964615 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00532935 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0116816 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAACCCCT CGACCGCCCT CGCGACGGTC CTCGTCGACA CCCTGGTCCG GCTCGGCCTG CGCCACCTCG TGCTCAGCCC CGGCTCGCGC AGCGCCCCGC TGGCCTACGC CGCCGCCCGG GCCGCCGACG AGGGCCGGCT GACCCTGCAC GTGCGCGTCG ACGAGCGCAG CGCCGGCTTC CTCGCCCTGG GCCTCGCCCG GGCGGGTGAA CTGGTCGCCG TCGTCACCAC GTCCGGCACG GCCGTCGCGA ACCTGCACCC GGCCGTCCTG GAGGCCCACC ACGCCGGCGT CCCGCTGGTG GTGCTCTCCG CGGACCGCCC GCACGAGCTG CGCGGCTCCG GCGCCAGCCA GACCGCCGAC GCCCAGGCGC GGATGTTCCT GCCCTCGGTG CGCTACAGCG CCGACGTGCC GGCCCCCGTC GACCCGGACC GGCAGGCGCC GGCGTGGCGC TCGCTGCTCT CGCGCGCGGT GGCCTTCGCC CGCGGCCTGC GCGGGGACGG ACCGGGCCCG GTGCACCTCA ACGTGGGCTT CGCCGACCCG CTGACCCCCT CCCCGGGTGA CGTCCCCCCG GGCCCGGGGC TGACGCAGGT CCACGGGCCG GGGGCTCCCG CGCCGGTCGC GCTGGAGCGT GGGCCGCGCA CCCTCGTCCT CGCCGGCGAC GCCCCCGACC CCGCCACCGG GGCCGCCGCG CGGGAGCTGG CGGAGTCCGC GGGCTGGCCG CTGCTGGCCG AGCCCAGCTC CGGGGCGCGC GGGGGCGAGC GCGCCGTCGG TCCCTACCGG CTGCTGCTGG ACGCGGTCGA CGCCGAGGGC CCGCTGGGCG CGGTGGAGCG GGTGGTGCTC TTCGGCCACC CCACGCTCTC GCGCCCGGTG ACGCGCCTGC TGGCCCGCGA CGACGTCGAG CTGGTCGTGG TCAGCGCCGC GGGGACGTGG TCCGACGCGG GCTTCCGCGC CGCGCGCGTC GTGCCCGCCG CGCAGGTGCA GGGCCCGCCG GGCGCGGGGG AGCAGGAGTT CGCCGCCCGC TGGGACCGGG CGGGCAAGCT GGCCGCCGAC GCCGTCGACG CGGCCCTCGA CGCCGAGGCC GGGCTGAGCG GCCCCTGGGC GGCCCGGGAG GTCGTGGCCG CCTGCGCCGC CGACGGCTCC ACCCTGGTCG TCGCGGCCAG CAACGCGATC CGCGACGTCG ACCTGACCGC CCGCCCGCTG GGGGTCCGCA CCGTCTCCAA CCGCGGCCTG GCCGGCATCG ACGGCACGAC CGCCACCGCC GAGGGCGTCG CGCTGGCCAC CGGCCCGACG CGGCTGCTGC TGGGGGACCT GGCCTTCCTG CACGACGCGA ACGCGCTGCT GCCGGTGCCG GGGGAGGTCC GTCCCGACCT GACCGTCGTC GTCGTCAACG ACGACGGCGG GGGGATCTTC GAGACCCTCG AGCACGCCTC CGCCGTGGAC CGCGCCACCT TCGAGCGGGT GGTGGCGACC CCGCACGGGG TGGACGTGGC CGCCCTGTGC GCAGCGTTCG GCGTCGCGCA CTCGCGTCCC GCGACCCGCG CGGAGGCCCT CGCCGCGCTG ACCGCCCGCC CGCGCGGGCT GCGGGTCGTC GAGCTCGTCA CCGCCCGCGA CCGGGTCCGC CCGCGCTTGG AGCGCATCGC CGCCGCCGTC CGCGCCGCCG TCGCCTGA
|
Protein sequence | MNPSTALATV LVDTLVRLGL RHLVLSPGSR SAPLAYAAAR AADEGRLTLH VRVDERSAGF LALGLARAGE LVAVVTTSGT AVANLHPAVL EAHHAGVPLV VLSADRPHEL RGSGASQTAD AQARMFLPSV RYSADVPAPV DPDRQAPAWR SLLSRAVAFA RGLRGDGPGP VHLNVGFADP LTPSPGDVPP GPGLTQVHGP GAPAPVALER GPRTLVLAGD APDPATGAAA RELAESAGWP LLAEPSSGAR GGERAVGPYR LLLDAVDAEG PLGAVERVVL FGHPTLSRPV TRLLARDDVE LVVVSAAGTW SDAGFRAARV VPAAQVQGPP GAGEQEFAAR WDRAGKLAAD AVDAALDAEA GLSGPWAARE VVAACAADGS TLVVAASNAI RDVDLTARPL GVRTVSNRGL AGIDGTTATA EGVALATGPT RLLLGDLAFL HDANALLPVP GEVRPDLTVV VVNDDGGGIF ETLEHASAVD RATFERVVAT PHGVDVAALC AAFGVAHSRP ATRAEALAAL TARPRGLRVV ELVTARDRVR PRLERIAAAV RAAVA
|
| |