Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_0580 |
Symbol | rpoB |
ID | 8379765 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | + |
Start bp | 626830 |
End bp | 630342 |
Gene Length | 3513 bp |
Protein Length | 1170 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 645003317 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_003160547 |
Protein GI | 256831820 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0311917 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCTGCCT CGCGCACCCC TTCTGCTCCG ACCGCCGACG CCATCGCCAC GCGCACCGCG TCACGACGTG TCTCATTCGC AAAGATTTAC GAACCACTCG AGGTACCAGA CCTCCTCGGT CTGCAAGTTG ATAGTTTCGA CTGGCTCATC GGGCATGACC GGTGGCGCGC CCGCGTCGAC GCTGCCAAAG CAGCGGGACG CAAAGACGTG CCCGAAACGT CAGGGTTGGA AGAGGTCTTC CAAGAGATCT CTCCCATCGA AGACTTCGGT CAAACGATGT CCTTGTCGTT CTCGAACTAC CGCTTCGAGC CACCAAAACA CACCGCTGAC GAGTGTAAAG ACAAAGACTT CACCTACGCA GCTCCGCTGT TTGTGACAGC AGAGTTCTTC AACTACAACA CGGGTGAAAT CAAGAGCCAA ACCGTCTTCA TGGGTGACTT CCCACTCATG ACCGAACGAG GCACCTTCAT CATCAACGGG ACCGAGCGTG TCGTTGTGTC CCAGTTGGTG CGTTCGCCAG GTGTCTACTT TGAACGGACA CCGGATAAAA CCAGCGACAA AGACATTCTC TCCGCGAAGA TCATCCCCTC GCGCGGTGCA TGGCTTGAGT TTGAAATCGA CAAGCGTGAC GCTGTCGGTG TGCGCGTTGA CCGCAAACGT AAGCAATCAG TGACTGTTCT CCTGAAGGCG CTTGGCATGT CCGAGTCGGA AATCCGGGAA ACCTTCGCTG AATTCCCTGT TGTCCTTGAC GTTCTCGAAA AGGACTCAGT GCACACCGAA GAAGAGGCTC TCGTCGACCT CTACCGTAAA ATCCGTCCAG GTGAGCCACC CACAGTTGAG GCTGGACGTA ACCTGCTGGA GAACTTTTAC TTCAAGCCAA AGCGTTACGA CCTCGCCAAG GTTGGCCGCT ACAAGCTCAA CAAGAAGATC GGTGTTGACG CAGCCATCGA CCAGGCTGTT TTGAGCTTGG ACGACATCAT TGCAACGATC AAGTACCTTG CTGCACTGCA CGCAGACAAG AACTCAATGA GTGTCGACAT TGACGGTCAA GCAACCGATA TTCGCGTTGA AACTGACGAC ATTGACCACT TCGGTAACCG TCGCATTCGC GCTGTTGGCG AGTTGATCCA AAACCAAATC CGTACGGGTC TTTCCCGCAT GGAACGTGTC GTGCGGGAAC GGATGACAAC GCAAGACGTT GAAGCGATCG CACCACAAAC ACTCATCAAC ATCAGACCAG TCGTAGCAGC GATCAAGGAG TTCTTCGGAA CCTCTCAGTT GTCGCAGTTC ATGGACCAGA ACAACCCGCT CGCCGGTTTG ACCCACAAGC GCCGCCTGTC AGCGCTTGGT CCAGGTGGTT TGTCTCGTGA CCGGGCAGGC ATGGAAGTGC GAGATGTTCA CCCATCCCAC TATGGCCGCA TGTGCCCCAT CGAGACACCA GAAGGCCCCA ACATTGGTCT GATTGGTTCG CTTGCCTCCT TTGGTCGCAT CAACCCGTTC GGGTTCATTG AGACGCCTTA CCGCAAGGTG GAGAACGGTC GTGTCACTGA GGAACTCGTC TACCTCACCG CTGACGACGA AGACCGCTAC GTCATTGCCC AGGCAAACAC TCCTCTCAAT GAGGACGGCT CATTCGCTCA GGACCGAGTT CTCGTCCGTA CCAAGGGTGG CGAAACCGAC GACGTCCTTG CAGCGGCCGT GGACTACATG GACGTCTCCC CACGCCAGAT GGTGTCTGTC GCTACTGCGC TGATTCCGTT CCTTGAGCAC GACGATGCGA ACCGTGCGCT CATGGGCGCG AACATGCAAC GCCAGGCTGT GCCGCTCGTG CGTAGTGAAG CTCCCTACGT GGGAACTGGT ATGGAATGGC GTGCAGCAGT GGACGCCGGA GACGTCATCG TGGCAACAAA GCCCGGTGTC GTCACTGAAG TGTCTGCTGA TCTCATCGTT GTTGCCAACG ATGACGGAAC CACAACGTCA TACCGCGTCT CCAAGTTCCG GCGCTCCAAC CAAGGAACGT CCTACAACCA ACGAGTAGTT GCCGTCCAAG ACGAACGCGT TGAAGTGGGA ACAGTCCTTG CTGATGGTCC AGCAACCGAT GGTGGTGAAC TGGCACTCGG GCGAAACCTC CTCGTGGCGT TCATGTCATG GGAAGGGCAC AACTTCGAAG ACGCGATCAT CCTGTCTCAG CGTCTTGTCC AGGACGATGT CCTGTCATCC ATTCACATCG AAGAACACGA AATCGATGCG CGTGACACCA AGCTTGGTCC AGAGGAAATC ACACGAGACA TCCCGAACGT CTCCGAAGAC GTCCTCGCCG ACCTTGACGA ACGCGGGATC ATCCGCATCG GTGCTGAGGT TACCTCCGGT GACATCCTCG TCGGTAAAGT GACACCGAAG GGTGAAACTG AACTCACCCC AGAAGAGCGT CTGCTCCGTG CAATCTTCGG TGAAAAAGCT CGTGAAGTTC GCGACACCTC GTTGAAGGTT CCACACGGTG AATCCGGCAC AGTGATCGCC ATCCGCACCT TCAACCGTGA AGACGGTGAC GAGCTGCCAG CTGGAGTGAA CGAGCTCGTT CGTGTGTACA TCGCACAGCG CCGTAAAATC ACTGCCGGTG ACAAGCTTGC CGGTCGTCAC GGAAACAAGG GTGTCATCTC GACCATCCTT CCAGTAGAGG ACATGCCATT CCTTGAGGAC GGAACCGCTG TTGACGTCAT CTTGAACCCC ATGGGTGTTC CAGGACGTAT GAACGTTGGC CAGGTTCTCG AAGTGCACCT GGGATGGATC GCAAGCCGCG GATGGGACAC CTCCTTGGTG ACCGAGGGCA ATCTGGATTG GAAGGACACC CTTCCAGAGT TCGCTCACAA AGTGGCTCCA GGAACCCCCG TGGCGACCCC AGTCTTTGAC GGGTTAGAAG AAGAAGCGCT TGTTGGTTTG CTCAAGTCGA CGCTTCCCTC ACGCGATGGT GACCAGTTGG TTCAAGCTGA CGGTAAGGCT CGCCTCTTTG ATGGTCGTTC GGGAGAGCCG TTCCCCGAGC CCATCTCAGT GGGTTACATG TACATCTTGA AGCTGCACCA CCTCGTCGAT GACAAGATCC ACGCTCGTTC CACTGGGCCT TACTCGATGA TTACGCAGCA GCCACTCGGT GGTAAAGCCC AGTTCGGTGG TCAGCGATTC GGAGAAATGG AAGTGTGGGC GCTCGAAGCA TACGGTGCCG CATACACACT CCAGGAACTG CTCACGATCA AGTCAGACGA CGTTCCAGGA CGTGTCAAGG TCTACGAAGC AATCGTCAAG GGCGAGAACA TCCCTGACTC CGGTATCCCA GAATCATTCA AGGTCCTCCT CAAAGAGATG CAGTCACTGT GCCTCAACGT GGAAGTCCTT TCCTCCGATG GCGTCTCCAT TGAAATGAAG GAGAACGACG ACGAGGTATA CCGTGCAGCG GAAGAACTCG GCATCGACCT GTCACGGCGT CCGAACGCCG CATCAAGCAT CGACGAGATC TGA
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Protein sequence | MAASRTPSAP TADAIATRTA SRRVSFAKIY EPLEVPDLLG LQVDSFDWLI GHDRWRARVD AAKAAGRKDV PETSGLEEVF QEISPIEDFG QTMSLSFSNY RFEPPKHTAD ECKDKDFTYA APLFVTAEFF NYNTGEIKSQ TVFMGDFPLM TERGTFIING TERVVVSQLV RSPGVYFERT PDKTSDKDIL SAKIIPSRGA WLEFEIDKRD AVGVRVDRKR KQSVTVLLKA LGMSESEIRE TFAEFPVVLD VLEKDSVHTE EEALVDLYRK IRPGEPPTVE AGRNLLENFY FKPKRYDLAK VGRYKLNKKI GVDAAIDQAV LSLDDIIATI KYLAALHADK NSMSVDIDGQ ATDIRVETDD IDHFGNRRIR AVGELIQNQI RTGLSRMERV VRERMTTQDV EAIAPQTLIN IRPVVAAIKE FFGTSQLSQF MDQNNPLAGL THKRRLSALG PGGLSRDRAG MEVRDVHPSH YGRMCPIETP EGPNIGLIGS LASFGRINPF GFIETPYRKV ENGRVTEELV YLTADDEDRY VIAQANTPLN EDGSFAQDRV LVRTKGGETD DVLAAAVDYM DVSPRQMVSV ATALIPFLEH DDANRALMGA NMQRQAVPLV RSEAPYVGTG MEWRAAVDAG DVIVATKPGV VTEVSADLIV VANDDGTTTS YRVSKFRRSN QGTSYNQRVV AVQDERVEVG TVLADGPATD GGELALGRNL LVAFMSWEGH NFEDAIILSQ RLVQDDVLSS IHIEEHEIDA RDTKLGPEEI TRDIPNVSED VLADLDERGI IRIGAEVTSG DILVGKVTPK GETELTPEER LLRAIFGEKA REVRDTSLKV PHGESGTVIA IRTFNREDGD ELPAGVNELV RVYIAQRRKI TAGDKLAGRH GNKGVISTIL PVEDMPFLED GTAVDVILNP MGVPGRMNVG QVLEVHLGWI ASRGWDTSLV TEGNLDWKDT LPEFAHKVAP GTPVATPVFD GLEEEALVGL LKSTLPSRDG DQLVQADGKA RLFDGRSGEP FPEPISVGYM YILKLHHLVD DKIHARSTGP YSMITQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEL LTIKSDDVPG RVKVYEAIVK GENIPDSGIP ESFKVLLKEM QSLCLNVEVL SSDGVSIEMK ENDDEVYRAA EELGIDLSRR PNAASSIDEI
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