Gene Hoch_0286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_0286 
Symbol 
ID8542665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp418400 
End bp419866 
Gene Length1467 bp 
Protein Length488 aa 
Translation table11 
GC content72% 
IMG OID646385082 
Producttwo component, sigma54 specific, transcriptional regulator, Fis family 
Protein accessionYP_003264820 
Protein GI262193611 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.525369 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCCGG CCCAGCGCGT GCTCGTGGTC GACGCCGAGC CGCAGATCCA TCGCCTCATC 
GCGCTGCTGC TGGGCGACGG TTATCAGGTC GATGGCGCGG CGTCGGCGGC CGAGGCCATC
GCGCGCGTGC ATCACACGCC CTACGACGCG GTGCTCATCG ACACCGATCT GCCGACCATG
AGCGGCTTCG ATCTGCTGCG CAAGCTGCGC AAGCTGGCCC CGGAGCTGGC GGTCATTTTG
ACCACGGCGC AGGCCACGGT GCAGGCGGCG GTGAAGGCCA TCCGCATCGG CGCGCTCGAC
TATCTGCGCA AGACCGTGAG CGCCGACGAG CTGCGCGCCG CGGTCCAGCG CGCGGCCGAC
CACGCGACCC TGGCGCGCGA GGTGCGGCGG CTGCGCTCGG AGGTCGATCG CGCCCGCGGG
CTCGACCATC TCATCGGCGA TTCGCCCGCG ATGCGGCAGC TCGTCGGCCT GGTCGAGCGC
GTGGCCCACT CCGACGCGAC GGTGCTGATC CTGGGCGAGA GCGGCACCGG CAAGGAGCTG
CTCTCGCGCA CGCTGCACCG CATCGGGCCG CGCGCGGATC GGCCCTTCGT GGCCTTCGAT
TGCTCGGCGC TGACGCCCTC GCTGCTCGAG GCCGAGCTCT TCGGCCACGA GAAGGGCGCG
TTCACGGGCG CGGGCAAGGC GCGCCGCGGT CTGTTCCGCG AGGCCCATCA GGGGACGATC
TTCCTCGACG AGATCGGCGA TATCGCGCCC TCGGTGCAGA ACAAGCTGCT GCGCGTGCTG
CAGGAGCGCG AGATCAAGCC GGTGGGCGGC GACCAGTTCG TCCAGGTGGA CGTGCGCGTG
ATCGCGGCGA CCAACAAGGA TCTCAAGGCG CAGGTGGCGC GCGGCGCGTT TCGCGAGGAT
CTGTACTGGC GGCTGGCCGT GGTGCCGATC CAGGTGCCGC CGCTGCGCGA GCGACGCGAG
GACATCGCGC TGCTGGCGGC GCACATCCTC GAGCGCAAGC GCGGCGCGGC CAAGAGCTTC
GCCGGCGGCG AGACGCCGTA CCCGACCAAG ATCTCGCCGG GCGCGATGAC GCGGCTGCTG
GCGTATCACT GGCCGGGCAA CATCCGCGAG CTGGAGAACG TGCTGTCGCG CGCGGCCATC
CTGTGCGACG GCGAGGAGAT CCGGGCCGAC GACCTGGACA TGGTGGGCGT GCCCGGGGAC
CAGGCGACGC CGCCGGACAG CGCGGGCGCG ACCGAGGACG ACGCGCCCGG GCCGGCCAAG
CTGGGCGGGC TCGACGTCGA CGCCAGCGCC GGCCGTCCGC TCAAGCGGCT GATCGACGAG
ACCGTCAAGG CGGTCGAGCG CCAGGCCATC GCGGAGGCCC TCGAGCGCTG TGAGGGATCG
CCCTCCAAGG CCGCGCGCCG CCTCGGGATC AGCCGCGCTT CGGTCTACAA CAAGATCAAA
GAGTACGGGC TGCAGACGGG CTCGTAA
 
Protein sequence
MHPAQRVLVV DAEPQIHRLI ALLLGDGYQV DGAASAAEAI ARVHHTPYDA VLIDTDLPTM 
SGFDLLRKLR KLAPELAVIL TTAQATVQAA VKAIRIGALD YLRKTVSADE LRAAVQRAAD
HATLAREVRR LRSEVDRARG LDHLIGDSPA MRQLVGLVER VAHSDATVLI LGESGTGKEL
LSRTLHRIGP RADRPFVAFD CSALTPSLLE AELFGHEKGA FTGAGKARRG LFREAHQGTI
FLDEIGDIAP SVQNKLLRVL QEREIKPVGG DQFVQVDVRV IAATNKDLKA QVARGAFRED
LYWRLAVVPI QVPPLRERRE DIALLAAHIL ERKRGAAKSF AGGETPYPTK ISPGAMTRLL
AYHWPGNIRE LENVLSRAAI LCDGEEIRAD DLDMVGVPGD QATPPDSAGA TEDDAPGPAK
LGGLDVDASA GRPLKRLIDE TVKAVERQAI AEALERCEGS PSKAARRLGI SRASVYNKIK
EYGLQTGS