Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_0286 |
Symbol | |
ID | 8542665 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 418400 |
End bp | 419866 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 646385082 |
Product | two component, sigma54 specific, transcriptional regulator, Fis family |
Protein accession | YP_003264820 |
Protein GI | 262193611 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.525369 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACCCGG CCCAGCGCGT GCTCGTGGTC GACGCCGAGC CGCAGATCCA TCGCCTCATC GCGCTGCTGC TGGGCGACGG TTATCAGGTC GATGGCGCGG CGTCGGCGGC CGAGGCCATC GCGCGCGTGC ATCACACGCC CTACGACGCG GTGCTCATCG ACACCGATCT GCCGACCATG AGCGGCTTCG ATCTGCTGCG CAAGCTGCGC AAGCTGGCCC CGGAGCTGGC GGTCATTTTG ACCACGGCGC AGGCCACGGT GCAGGCGGCG GTGAAGGCCA TCCGCATCGG CGCGCTCGAC TATCTGCGCA AGACCGTGAG CGCCGACGAG CTGCGCGCCG CGGTCCAGCG CGCGGCCGAC CACGCGACCC TGGCGCGCGA GGTGCGGCGG CTGCGCTCGG AGGTCGATCG CGCCCGCGGG CTCGACCATC TCATCGGCGA TTCGCCCGCG ATGCGGCAGC TCGTCGGCCT GGTCGAGCGC GTGGCCCACT CCGACGCGAC GGTGCTGATC CTGGGCGAGA GCGGCACCGG CAAGGAGCTG CTCTCGCGCA CGCTGCACCG CATCGGGCCG CGCGCGGATC GGCCCTTCGT GGCCTTCGAT TGCTCGGCGC TGACGCCCTC GCTGCTCGAG GCCGAGCTCT TCGGCCACGA GAAGGGCGCG TTCACGGGCG CGGGCAAGGC GCGCCGCGGT CTGTTCCGCG AGGCCCATCA GGGGACGATC TTCCTCGACG AGATCGGCGA TATCGCGCCC TCGGTGCAGA ACAAGCTGCT GCGCGTGCTG CAGGAGCGCG AGATCAAGCC GGTGGGCGGC GACCAGTTCG TCCAGGTGGA CGTGCGCGTG ATCGCGGCGA CCAACAAGGA TCTCAAGGCG CAGGTGGCGC GCGGCGCGTT TCGCGAGGAT CTGTACTGGC GGCTGGCCGT GGTGCCGATC CAGGTGCCGC CGCTGCGCGA GCGACGCGAG GACATCGCGC TGCTGGCGGC GCACATCCTC GAGCGCAAGC GCGGCGCGGC CAAGAGCTTC GCCGGCGGCG AGACGCCGTA CCCGACCAAG ATCTCGCCGG GCGCGATGAC GCGGCTGCTG GCGTATCACT GGCCGGGCAA CATCCGCGAG CTGGAGAACG TGCTGTCGCG CGCGGCCATC CTGTGCGACG GCGAGGAGAT CCGGGCCGAC GACCTGGACA TGGTGGGCGT GCCCGGGGAC CAGGCGACGC CGCCGGACAG CGCGGGCGCG ACCGAGGACG ACGCGCCCGG GCCGGCCAAG CTGGGCGGGC TCGACGTCGA CGCCAGCGCC GGCCGTCCGC TCAAGCGGCT GATCGACGAG ACCGTCAAGG CGGTCGAGCG CCAGGCCATC GCGGAGGCCC TCGAGCGCTG TGAGGGATCG CCCTCCAAGG CCGCGCGCCG CCTCGGGATC AGCCGCGCTT CGGTCTACAA CAAGATCAAA GAGTACGGGC TGCAGACGGG CTCGTAA
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Protein sequence | MHPAQRVLVV DAEPQIHRLI ALLLGDGYQV DGAASAAEAI ARVHHTPYDA VLIDTDLPTM SGFDLLRKLR KLAPELAVIL TTAQATVQAA VKAIRIGALD YLRKTVSADE LRAAVQRAAD HATLAREVRR LRSEVDRARG LDHLIGDSPA MRQLVGLVER VAHSDATVLI LGESGTGKEL LSRTLHRIGP RADRPFVAFD CSALTPSLLE AELFGHEKGA FTGAGKARRG LFREAHQGTI FLDEIGDIAP SVQNKLLRVL QEREIKPVGG DQFVQVDVRV IAATNKDLKA QVARGAFRED LYWRLAVVPI QVPPLRERRE DIALLAAHIL ERKRGAAKSF AGGETPYPTK ISPGAMTRLL AYHWPGNIRE LENVLSRAAI LCDGEEIRAD DLDMVGVPGD QATPPDSAGA TEDDAPGPAK LGGLDVDASA GRPLKRLIDE TVKAVERQAI AEALERCEGS PSKAARRLGI SRASVYNKIK EYGLQTGS
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