| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2000 |
|---|
| Symbol | |
|---|
| ID | 4710417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 2204773 |
|---|
| End bp | 2206356 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639856473 |
|---|
| Product | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
|---|
| Protein accession | YP_001003566 |
|---|
| Protein GI | 121998779 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0138] AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) |
|---|
| TIGRFAM ID | [TIGR00355] phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00113973 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACCA ACGACGGCGT GCGGCCCCTG CGGCGGGCCC TGATCAGCGT TTCCGATAAG
AGCGGGGTGG AGGGCTTTGC CCGCGCCCTG CATGAGCAAG GCGTCGAGAT CCTCTCGACC
GGTGGTACGG CCCGCCTGCT GGGTGAGGCC GGGATCCCGG TGCGGGAGGT CTCGGCCGAG
ACCGGCTTCC CGGAGATCAT GGACGGTCGC GTCAAGACCC TGCATCCGCG CATCCACGGC
GGGCTGCTGG GCCGGCGCGG CACGGATGAC GCGGTCATGG ACGAGCACGG CATTGGTCCC
ATCGATCTGC TTTGCGTCAA CCTCTACCCC TTCGAGCAGG CCGTGGCCGC CGAGGGCTGC
ACCTTGACCG ACGCCATCGA GAATATCGAT GTCGGCGGGC CGGCGATGAT CCGTGCGGCC
GCCAAGAACC ACGCCGACGT GGCGGTGGTG ACCGAGTCGT CGGCCTATGG CCTGGTCCTC
GATGAGCTCC AGCGCCTTGG CGGGACCAGC CGCGCCCTGC GCCACCATCT GGCGACCCGA
GCGTTCAGCC ACACCGCGCG CTACGACGGC GCCATCGCTG CCTACCTGAG CCAGCGCGAC
GAACAGGGCG AGCAGCAGGG CGATTTCCCG GCGATCTGGA CGCTCCAGGT GGAGAAGGTC
GCCGACATGC GTTACGGCGA GAACCCCCAT CAATCCGCTG CCTTCTATCG CGATGTCGCT
CCCGGCGAGG CCAGCGTGTC CACCGCCCGC CAGCTCCAGG GTAAGGCCCT GTCGTACAAC
AACGTGGCCG ACACCGACGC CGCCCTGGAG TGCGTCAAGG GCTTCCAGAC GCCGGCCTGC
GTCATCGTCA AGCACGCCAA TCCCTGCGGC GTGGCCTGCT CGGGGACGTT GCGGGAGGCC
TACGACCGGG CCTTCGAGGT CGATCCGACC TCCGCCTTCG GCGGCATCAT CGCCTTCAAC
GATACCGTCG ACGCCGAGCT GGCCGGCGCC ATCCTCGATC GCCAGTTCGT CGAGGTGGTC
ATCGCCCCGG AGGTCAGTGA CGAAGCCCTG TCGCGCTTCG CCGCCAAGGC CAACGTGCGA
GTCCTGCAGA CCGGCCGCTG GCCGCAGCAT CCGGGCGCGG ATCTGGAGCT CAAGCGGGTG
CGTGGCGGCC TCCTGGTGCA GGACCGGGAC ACCGCGGTGG TTGATCCGGC CGACCTGCGG
GTGGTCACCA AGCGCCAGCC CACCGATGCC GAGTGGGCCG ACCTGCGCTT CGCCTGGGAG
GTGGTGCGGC ACGTGAAGTC CAACGCCATC GTTTTCGCCG GCGGGCAGCG CACCCTCGGC
GTGGGGGCCG GGCAGATGAG CCGTGTCTTC AGTACCCGTA TTGCCTGCGA GAAGGCGGCC
GATGCGGGCC TGGCGCTGCA GGGCTCGGTC CTGGCCTCTG ACGCCTTCTT CCCGTTCCGC
GACGGCGTCG ATCAGGCTGC CGAGGCCGGC GCCGCCGCCG TGATCCAGCC CGGTGGCTCG
ATGCGGGATC AGGAGGTCAT CGATGCCGCC GACGAGCACG GTCTGGCCAT GGTCTTCACC
GGGATGCGCC ACTTCCGCCA CTGA
|
|---|
| Protein sequence | MATNDGVRPL RRALISVSDK SGVEGFARAL HEQGVEILST GGTARLLGEA GIPVREVSAE
TGFPEIMDGR VKTLHPRIHG GLLGRRGTDD AVMDEHGIGP IDLLCVNLYP FEQAVAAEGC
TLTDAIENID VGGPAMIRAA AKNHADVAVV TESSAYGLVL DELQRLGGTS RALRHHLATR
AFSHTARYDG AIAAYLSQRD EQGEQQGDFP AIWTLQVEKV ADMRYGENPH QSAAFYRDVA
PGEASVSTAR QLQGKALSYN NVADTDAALE CVKGFQTPAC VIVKHANPCG VACSGTLREA
YDRAFEVDPT SAFGGIIAFN DTVDAELAGA ILDRQFVEVV IAPEVSDEAL SRFAAKANVR
VLQTGRWPQH PGADLELKRV RGGLLVQDRD TAVVDPADLR VVTKRQPTDA EWADLRFAWE
VVRHVKSNAI VFAGGQRTLG VGAGQMSRVF STRIACEKAA DAGLALQGSV LASDAFFPFR
DGVDQAAEAG AAAVIQPGGS MRDQEVIDAA DEHGLAMVFT GMRHFRH
|
|---|
| |